Job Description P38506 Confidence 100.00% Date Thu Jan 5 11:58:11 GMT 2012 Rank 2 Aligned Residues 232 % Identity 24% Template c1ut8B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:exodeoxyribonuclease; PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease Resolution 2.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																				.																																																													.
Query SS confidence																				.																																																													.
Query Sequence		V	H	L	L	I	V	D	A	L	N	L	I	R	R	I	H	A	V	.	Q	G	S	P	C	V	E	T	C	Q	H	A	L	D	Q	L	I	M	H	S	Q	P	T	H	A	V	A	V	F	D	D	E	N	R	S	S	G	W	R	H	Q	R	L	P	D	Y	K	A	G	R	P	P	M	P	E	E	L	H	D	E	.
Query Conservation																				.																																																													.
Alig confidence																				.																																				.	.																								.
Template Conservation																																																								.	.
Template Sequence		R	N	L	M	I	V	D	G	T	N	L	G	F	R	F	K	H	N	N	S	K	K	P	F	A	S	S	Y	V	S	T	I	Q	S	L	A	K	S	Y	S	A	R	T	T	I	V	L	G	D	K	G	K	S	V	.	.	F	R	L	E	H	L	P	E	Y	K	G	N	R	D	E	K	Y	A	Q	R	T	E	E	E
Template Known Secondary structure																					T	T	S																	T	T										B	S				.	.							T	T	T	T									T	S
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
									81	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure		.	.	.	.	.	.	.											.	.
Query SS confidence		.	.	.	.	.	.	.											.	.
Query Sequence		.	.	.	.	.	.	.	M	P	A	L	R	A	A	F	E	Q	.	.	R	G	V	P	C	W	S	T	S	G	N	E	A	D	D	L	A	A	T	L	A	V	K	V	T	Q	A	G	H	Q	A	T	I	V	S	T	D	K	G	Y	C	Q	L	L	S	P	T	L	R	I	R	D	Y	F	Q	K	R	W	L	D	A
Query Conservation		.	.	.	.	.	.	.											.	.
Alig confidence		.	.	.	.	.	.	.											.	.
Template Conservation
Template Sequence		K	A	L	D	E	Q	F	F	E	Y	L	K	D	A	F	E	L	C	K	T	T	F	P	T	F	T	I	R	G	V	E	A	D	D	M	A	A	Y	I	V	K	L	I	G	H	L	Y	D	H	V	W	L	I	S	T	D	G	D	W	D	T	L	L	T	D	K	V	S	R	F	S	F	T	T	R	R	E	Y	H	L
Template Known Secondary structure																							S						T	T	B													T	G	G	G	S	S							S		G	G	G	G	G	S			S	S						T	T	T	T					G
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.																																																			.
Query SS confidence													.																																																			.
Query Sequence		P	F	I	D	K	E	F	G	V	Q	P	.	Q	Q	L	P	D	Y	W	G	L	A	G	I	S	S	S	K	V	P	G	V	A	G	I	G	P	K	S	A	T	Q	L	L	V	E	F	Q	S	L	E	G	I	Y	E	N	L	D	A	V	A	E	.	K	W	R	K	K	L	E	T	H	K	E	M	A	F	L	C	R
Query Conservation													.																																																			.
Alig confidence													.																																																			.
Template Conservation
Template Sequence		R	D	M	Y	E	H	H	N	V	D	D	V	E	Q	F	I	S	L	K	A	I	M	G	D	L	G	D	N	I	R	G	V	E	G	I	G	A	K	R	G	Y	N	I	I	R	E	F	G	N	V	L	D	I	I	D	Q	L	P	L	P	G	K	Q	K	Y	I	Q	N	L	N	A	S	E	E	L	L	F	R	N	L
Template Known Secondary structure		G	G						S	S	S	S													B	T	T	T	T	B				T	T															S						T	T		S		S			S							T	T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	A	R	L	Q	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	V	D	L	P	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions