Job Description P38506 Confidence 100.00% Date Thu Jan 5 11:58:11 GMT 2012 Rank 4 Aligned Residues 231 % Identity 17% Template c1rxvA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20															.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	V	H	L	L	I	V	D	A	L	N	L	I	R	R	I	H	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	S	P	C	V	E	T	C	Q	H	A	L	D	Q	L	I	M	H	S	Q	P	T	H	A	V	A	V	F	D	D	E	N	R	S	S	G	W	R	H	Q	R	L	P	D	Y
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.																.	.
Template Conservation																																																						.	.																.	.
Template Sequence		F	S	G	K	K	I	A	V	D	A	F	N	T	L	Y	Q	F	I	S	I	I	R	Q	P	D	G	T	P	L	K	D	S	Q	G	R	I	T	S	H	L	S	G	I	L	Y	R	V	S	N	M	V	E	.	.	V	G	I	R	P	V	F	V	F	D	G	E	P	P	E	.	.	F	K	K	A	E	I	E	E	R
Template Known Secondary structure		G	T	T																		S	B		T	T	S		B		B		T	T	S		B																	.	.	T	T													G	.	.	G	G
Template Predicted Secondary structure																																																						.	.																.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.
																								67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	G	R	P	P	M	P	E	E	L	H	D	E	M	P	A	L	R	A	A	F	E	Q	R	G	V	P	C	W	S	T	S	G	N	E	A	D	D	L	A	A	T	L	A	V	K	V	T	Q	A	G	H	Q	A	T	I	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.														.	.	.	.
Template Conservation																																																									.														.	.	.	.
Template Sequence		K	K	R	R	A	E	A	E	E	M	W	I	A	A	L	Q	A	G	D	K	D	A	K	K	Y	A	Q	A	A	G	R	V	D	E	Y	I	V	D	S	A	K	T	L	L	S	Y	M	G	I	P	F	V	D	A	P	.	S	E	G	E	A	Q	A	A	Y	M	A	A	K	.	.	.	.	G	D	V	E	Y	T	G
Template Known Secondary structure																			T		S	T	T							T																			T							S	.	S												T	.	.	.	.	T	S		S
Template Predicted Secondary structure																																																									.														.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	D	K	G	Y	C	Q	L	L	S	P	T	L	R	I	R	D	Y	F	Q	K	R	W	L	D	A	P	F	I	D	K	E	F	G	V	Q	P	Q	Q	L	P	D	Y	W	G	L	A	G	I	S	S	S	K	V	P	G	V	A	G	I	G	P	K	S	A	T	Q	L	L	V	E	F	Q	S	L	E	G	I	Y
Query Conservation
Alig confidence																																																			.	.
Template Conservation																																																			.	.
Template Sequence		S	Q	D	Y	D	S	L	L	F	G	S	P	R	L	A	R	N	L	A	I	K	P	E	I	I	I	L	E	S	N	L	K	R	L	G	L	T	R	E	Q	L	I	D	I	A	I	L	V	G	.	.	T	D	Y	N	E	G	V	K	G	V	G	V	K	K	A	L	N	Y	I	K	T	Y	G	D	I	F	R	A	L
Template Known Secondary structure			S	S	S					T	T		S					S	T	T																T													T		.	.		T	T					T	T														S	S
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	L	D	A	V	A	E	K	W	R	K	K	L	E	T	H	K	E	M	A	F	L	C	R	D	I	A	R	L	Q	T	D	L	H	I	D	G	N	L	Q	Q	L
Query Conservation
Alig confidence																	.	.	.	.	.
Template Conservation																	.	.	.	.	.
Template Sequence		K	A	L	K	V	N	I	D	H	V	E	E	I	R	N	.	.	.	.	.	F	F	L	N	P	P	V	T	D	D	Y	R	I	E	F	R	E	P	D	F	E	K	A
Template Known Secondary structure				S	S				T	T							.	.	.	.	.				S
Template Predicted Secondary structure																	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.						.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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