Job Description P38506 Confidence 100.00% Date Thu Jan 5 11:58:11 GMT 2012 Rank 1 Aligned Residues 243 % Identity 31% Template c1cmwA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: crystal structure of taq dna-polymerase shows a new2 orientation for the structure-specific nuclease domain Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.										.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.
Query Sequence		A	V	H	L	L	I	V	D	A	L	N	L	I	R	R	I	H	A	V	Q	.	.	.	.	.	.	.	.	.	G	S	P	C	V	E	T	C	Q	H	A	L	D	Q	L	I	M	H	S	Q	P	T	H	A	V	A	V	F	D	D	E	N	R	S	S	G	W	R	H	Q	R	L	P	D	Y	K	A	G	R	P	P
Query Conservation																						.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																			.																.	.
Template Conservation																																																	.																.	.
Template Sequence		K	G	R	V	L	L	V	D	G	H	H	L	A	Y	R	T	F	H	A	L	K	G	L	T	T	S	R	G	E	P	V	Q	A	V	Y	G	F	A	K	S	L	L	K	A	L	K	E	.	D	G	D	A	V	I	V	V	F	D	A	K	A	P	S	.	.	F	R	H	E	A	Y	G	G	Y	K	A	G	R	A	P
Template Known Secondary structure										T	T								T	S	S	T	T		B		T	T	S		B																		.			S									S	S	S		.	.	T	T	G	G	G	G	S	T	T	T	S
Template Predicted Secondary structure																																																	.																.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	E	E	L	H	D	E	M	P	A	L	R	A	A	F	E	Q	R	G	V	P	C	W	S	T	S	G	N	E	A	D	D	L	A	A	T	L	A	V	K	V	T	Q	A	G	H	Q	A	T	I	V	S	T	D	K	G	Y	C	Q	L	L	S	P	T	L	R	I	R	D	Y	F	Q	K	R	W	L	D	A	P
Query Conservation
Alig confidence																																																																									.
Template Conservation																																																																									.
Template Sequence		T	P	E	D	F	P	R	Q	L	A	L	I	K	E	L	V	D	L	L	G	L	A	R	L	E	V	P	G	Y	E	A	D	D	V	L	A	S	L	A	K	K	A	E	K	E	G	Y	E	V	R	I	L	T	A	D	K	D	L	Y	Q	L	L	S	D	R	I	H	V	L	H	P	.	E	G	Y	L	I	T	P	A
Template Known Secondary structure				S	S															T	T							T	T	S																T	T								S	S	G	G	G	G	G	S			S	S						S	.	S	S	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	D	K	E	F	G	V	Q	P	Q	Q	L	P	D	Y	W	G	L	A	G	I	S	S	S	K	V	P	G	V	A	G	I	G	P	K	S	A	T	Q	L	L	V	E	F	Q	S	L	E	G	I	Y	E	N	L	D	A	V	A	E	K	W	R	K	K	L	E	T	H	K	E	M	A	F	L	C	R	D	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	L	W	E	K	Y	G	L	R	P	D	Q	W	A	D	Y	R	A	L	T	G	D	E	S	D	N	L	P	G	V	K	G	I	G	E	K	T	A	R	K	L	L	E	E	W	G	S	L	E	A	L	L	K	N	L	D	R	L	K	P	A	I	R	E	K	I	L	A	H	M	D	D	L	K	L	S	W	D	L	A
Template Known Secondary structure						S	S				G	G	G							T	T			S	S	S								S	T	T		T	T	T	T	T	G	G	G	G	G	T	T		S	S	S	S	S						T	T	T	T					T	S	T	T	T	T	T	T	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	Q	T	D	L	H	I	D	G	N	L	Q	Q	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	R	T	D	L	P	L	E	V	D	F	A	K	R	R
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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