Job Description P38506 Confidence 100.00% Date Thu Jan 5 11:58:11 GMT 2012 Rank 6 Aligned Residues 207 % Identity 16% Template c1a77A_ PDB info PDB header:5'-3' exo/endo nuclease Chain: A: PDB Molecule:flap endonuclease-1 protein; PDBTitle: flap endonuclease-1 from methanococcus jannaschii Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.															.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	V	H	L	L	I	V	D	A	L	N	L	I	R	R	I	H	A	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	P	C	V	E	T	C	Q	H	A	L	D	Q	L	I	M	H	S	Q	P	T	H	A	V	A	V	F	D	D	E	N	R	S	S	G	W	R	H	Q	R	L	P	D	Y
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																.	.
Template Conservation																																																						.	.																.	.
Template Sequence		L	K	G	K	K	V	A	I	D	G	M	N	A	L	Y	Q	F	L	T	S	I	R	L	R	D	G	S	P	L	R	N	R	K	G	E	I	T	S	A	Y	N	G	V	F	Y	K	T	I	H	L	L	E	.	.	N	D	I	T	P	I	W	V	F	D	G	E	P	P	K	.	.	L	K	E	K	T	R	K	V	R
Template Known Secondary structure		G	T	T																		S	B		T	T	S		B		B		T	T	S		B																	.	.	T	T											T	T		.	.				S	S			S	S
Template Predicted Secondary structure																																																						.	.																.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.																								.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	G	R	P	P	M	P	E	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	D	E	M	P	A	L	R	A	A	F	E	Q	R	G	V	P	C	W	S	T	S	G	N	E	A	D	D	L	A	A	T	L	A	V	K	V	T	Q	A	G	H	Q	A	T	I
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.														.	.	.	.
Template Conservation																																																										.														.	.	.	.
Template Sequence		R	E	M	K	E	K	A	E	L	K	M	K	E	A	I	K	K	E	D	F	E	E	A	A	K	Y	A	K	R	V	S	Y	L	T	P	K	M	V	E	N	C	K	Y	L	L	S	L	M	G	I	P	Y	V	E	A	P	.	S	E	G	E	A	Q	A	S	Y	M	A	K	K	.	.	.	.	G	D	V	W	A	V
Template Known Secondary structure			S	S	S	S	S	S	S								S					S	S	T	T	S	S	S	S	T	T		S																	T							S	.	S													.	.	.	.	T	S	S	S
Template Predicted Secondary structure																																																										.														.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.																																		.
Query SS confidence																									.	.	.																																		.
Query Sequence		V	S	T	D	K	G	Y	C	Q	L	L	S	P	T	L	R	I	R	D	Y	F	Q	K	.	.	.	R	W	L	D	A	P	F	I	D	K	E	F	G	V	Q	P	Q	Q	L	P	D	Y	W	G	L	A	G	I	S	S	S	K	V	.	P	G	V	A	G	I	G	P	K	S	A	T	Q	L	L	V	E	F	Q	S
Query Conservation																									.	.	.																																		.
Alig confidence																									.	.	.																												.	.					.
Template Conservation																																																							.	.
Template Sequence		V	S	Q	D	Y	D	A	L	L	Y	G	A	P	R	V	V	R	N	L	T	T	T	K	E	M	P	E	L	I	E	L	N	E	V	L	E	D	L	R	I	S	L	D	D	L	I	D	I	A	I	F	M	G	.	.	T	D	Y	N	P	G	G	V	K	G	I	G	F	K	R	A	Y	E	L	V	R	S	G	V	A
Template Known Secondary structure				S	S	S	G	G	G	G	G	T		S					S	S	S			S	S															T															.	.		T	T	S	T	T		S	T	T												T	T
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	G	I	Y	E	N	L	D	A	V	A	E	K	W	R	K	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D	V	L	K	K	E	V	E	Y	Y	D	E	I	K	R	I	F	K
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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