 |
Job Description | P39367 | Confidence | 98.47% | Date | Thu Jan 5 11:59:58 GMT 2012 |
Rank | 274 | Aligned Residues | 128 |
% Identity | 15% | Template | c3htxA_ |
PDB info |
PDB header:transferase/rna | Chain: A: PDB Molecule:hen1; |
PDBTitle: crystal structure of small rna methyltransferase hen1
|
Resolution | 3.10 Å |
|
 |
  |   |
16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
|
. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | |
|
|
|
|
. | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
| . | . |
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
Query Sequence |   |
I | H | N | P | F | T | E | E | K | Y | A | T | L | G | R | V | L | R | M | K | P | G | T | R | I | L | D | L | G | S | G | S | G | E | M | L | C | T | W | A | R | D | H | G | I | . |
. |
T | G | T | G | I | D | M | S | S | L | F | T | A | Q | A | K | R | R | A | E | E | L | G | V | S | . |
. |
. |
. |
. |
E | R | V |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|
|   |
|
|
|
|
|
|
|
|   |
|   |   |   |   |   |
|
|   |   |   |   |   | . | . |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
Template Conservation |   |
|   |
|
|
|
|   |
|
|
|
|
|
|
|   |   |
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|
|   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|   |   |
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|
|
|
Template Sequence |   |
F | K | P | P | L | S | K | Q | R | V | E | Y | A | L | K | H | I | R | E | S | S | A | S | T | L | V | D | F | G | C | G | S | G | S | L | L | D | S | L | L | D | Y | P | T | S | L | Q | T | I | I | G | V | D | I | S | P | K | G | L | A | R | A | A | K | M | L | H | V | K | L | N | K | E | A | C | N | V | K | S | A |
Template Known Secondary structure |   |
S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
| S |  |  |  |  |  | T |
| S | S | S |  |  |  |  |  |  | T | S | S |
|
|
|
|
|  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | T |
| S | S |
| S |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
693 | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . |
  |
  |   |
89 | 90 | . | . | . | . | . | . | . | . | . | 100 | . | |
. | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | |
|
. | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | F | I | H | N | D | A | A | G | Y | V | A | N | . |
E | K | C | D | V | A | A | C | V | G | A | T | W | I | A | G | . |
. |
G | F | A | G | A | E | E | L | L | A | Q | S | L | K | P | G | G | I | M | L | I | G | E | P | Y | W | R |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   | . | . |
|   |   |   |   |
|   |   |   |   |
|   |
|
|
|
|
|   |
|   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|
|
|   |
|   |
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|   |
|   |
|
|   |
|
|
|
|
|   |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
Template Sequence |   |
T | L | Y | D | G | S | I | L | E | F | D | S | R | L | H | D | V | D | I | G | T | C | L | E | V | I | E | H | M | E | E | D | Q | A | C | E | F | G | E | K | V | L | S | L | F | H | P | K | L | . |
L | I | V | S | T | P | N | Y | E |
Template Known Secondary structure |   |
 |  |  |  | S |
| T | T | S |
|
| T | T | S |
| S |
|
|  |  |  |  |  | S |
| G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  | . |  |  |  |  |  |
| B | G | G |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  | . |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
773 | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 | . | . | . | . | . | . | . | . | . | 800 | . | . | . | . | . | . | . | . | . | 810 | . | . | . | . | . | . | . | . | . | 820 | . | |
. | . | . | . | . | . | . | . | 830 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|