Job Description P39367 Confidence 95.01% Date Thu Jan 5 11:59:58 GMT 2012 Rank 341 Aligned Residues 118 % Identity 16% Template c2qy6A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7 Resolution 2.00 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.														60	.	.	.	.	.	.				.	.	.	70	.	.	.	.												.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Query Sequence		R	I	L	D	L	G	S	G	S	G	E	M	L	C	T	W	A	R	D	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	G	T	G	I	D	.	.	.	M	S	S	L	F	T	A	Q	.	.	.	.	.	.	.	.	.	.	.	A	K	R	R	A	E	E	L	G	V	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R
Template Known Secondary structure						S			T	T	S																		T	T	S	S											S	S												T	T		G	G	G										T				S		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
						85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.							.	.	.	.	.							.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																				.	.	.	.	.	.						.	.	.	.	.	.
Query SS confidence		.	.	.	.																				.	.	.	.	.	.						.	.	.	.	.	.
Query Sequence		.	.	.	.	S	E	R	V	H	F	I	H	N	D	A	A	G	Y	V	A	N	E	K	.	.	.	.	.	.	C	D	V	A	A	.	.	.	.	.	.	C	V	G	A	T	W	I	A	G	G	F	A	G	A	E	E	L	L	A	Q	S	L	K	P	G	G	I	M	L	I	G	E	P	Y	W	R	Q	L	P	A
Query Conservation		.	.	.	.																				.	.	.	.	.	.						.	.	.	.	.	.
Alig confidence		.	.	.	.																				.	.	.	.	.	.						.	.	.	.	.	.									.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	L	D	R	V	T	L	D	L	W	F	G	D	I	N	E	L	I	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A	K	N	P	D	M	W	T	.	.	.	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A	T	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														S						G	G	G	S		G	G	G	T	T									S	S		T	T	T		G	G	G			.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	E	I	A	Q	A	C	G	V	S	S	T	S	D	F	L	T	L	P	G	L	V	G	A	F	D	D	L	G	Y	D	V	V	E	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	S	A	G	F	V	R	R	G	L	Q	E	A	G	F	T	M	Q	K	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S														T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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