Job Description P39367 Confidence 60.76% Date Thu Jan 5 11:59:58 GMT 2012 Rank 397 Aligned Residues 97 % Identity 13% Template c2hwkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:helicase nsp2; PDBTitle: crystal structure of venezuelan equine encephalitis2 alphavirus nsp2 protease domain Resolution 2.45 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	T	R	I	L	D	L	G	S	G	S	G	E	M	L	C	T	W	A	R	D	H	G	I	T	G	T	G	I	D	M	S	S	L	F	T	A	Q	A	K	R	R	A	E	E	L	G	V	S	E	R	V	H	F	I	H	N	D	A	A	G	Y	V	A	N	E	K	C	D	V	A	A	C	V	G	A	T	W	I
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template Sequence		K	G	R	T	V	L	V	V	G	E	K	L	S	V	.	.	.	.	.	.	.	.	P	G	K	M	V	D	W	L	S	D	R	P	E	A	T	F	R	A	R	L	D	L	G	I	P	G	D	V	P	K	Y	D	I	I	F	V	N	V	R	T	P	Y	K	Y	H	.	.	.	.	.	H	Y	Q	Q	C	E	D	H
Template Known Secondary structure		S		S							S					.	.	.	.	.	.	.	.	T	T	S							S	S	T	T		S					G	G	G		S		T	T	S																S		.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template SS confidence
		630	.	.	.	.	.	.	.	.	.	640	.	.	.									.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.						.	690	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	G	F	A	G	A	E	E	L	L	A	Q	S	L	K	P	G	G	I	M	L	I	G	E	P	Y	W	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	K	L	S	M	L	T	K	K	A	C	L	H	L	N	P	G	G	T	C	V	S	I	G	Y	G	Y	A	D
Template Known Secondary structure								T					G	G	G																S
Template Predicted Secondary structure
Template SS confidence
		697	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions