Job Description P39367 Confidence 99.11% Date Thu Jan 5 11:59:58 GMT 2012 Rank 228 Aligned Residues 109 % Identity 12% Template c2cmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of spermidine synthase from helicobacter2 pylori Resolution 2.0 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		E	K	Y	A	T	L	G	R	V	L	R	M	K	P	G	T	R	I	L	D	L	G	S	G	S	G	E	M	L	C	T	W	A	R	D	H	G	I	T	G	T	G	I	D	M	S	S	L	F	T	A	Q	A	K	R	R	A	E	E	L	G	V	S	E	R	V	H	F	I	H	N	D	A	A	G	Y	.	.	V	A
Query Conservation																																																																														.	.
Alig confidence																.																			.																												.															.	.
Template Conservation																.																			.																												.
Template Sequence		E	L	L	A	H	M	G	G	C	T	K	K	E	L	.	K	E	V	L	I	V	D	G	F	D	L	E	L	A	H	Q	L	F	.	K	Y	D	T	H	I	D	F	V	Q	A	D	E	K	I	L	D	S	F	I	S	F	F	P	H	F	H	.	E	V	K	N	N	K	N	F	T	H	A	K	Q	L	L	D	L	D
Template Known Secondary structure										T	T	S	S			.							S	S										T	.	T	S	S								S						G	G	G	T	T	T	S	T	T			.				T		T	T					S	S	G	G	G	S
Template Predicted Secondary structure																.																			.																												.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	K	C	D	V	A	A	C	V	G	A	T	W	I	A	G	G	F	A	G	A	E	E	L	L	A	Q	S	L	K	P	G	G	I	M	L	I	G
Query Conservation
Alig confidence											.	.	.	.	.
Template Conservation											.	.	.	.	.
Template Sequence		I	K	K	Y	D	L	I	F	C	.	.	.	.	.	L	Q	E	P	D	I	H	R	I	D	G	L	K	R	M	L	K	E	D	G	V	F	I	S	V
Template Known Secondary structure											.	.	.	.	.	S	S												T	T
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions