Job Description P76273 Confidence 98.19% Date Thu Jan 5 12:21:29 GMT 2012 Rank 223 Aligned Residues 134 % Identity 18% Template c3s1sA_ PDB info PDB header:hydrolase, transferase Chain: A: PDB Molecule:restriction endonuclease bpusi; PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi Resolution 2.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.
Predicted Secondary structure																																												.	.																										.	.	.	.	.	.
Query SS confidence																																												.	.																										.	.	.	.	.	.
Query Sequence		A	S	S	M	L	P	V	A	A	L	F	A	D	G	N	A	P	Q	R	V	M	D	V	A	A	A	P	G	S	K	T	T	Q	I	S	A	R	M	N	N	E	G	.	.	A	I	L	A	N	E	F	S	A	S	R	V	K	V	L	H	A	N	I	S	R	C	G	I	S	.	.	.	.	.	.	N	V	A	L	T
Query Conservation																																												.	.																										.	.	.	.	.	.
Alig confidence																																												.	.																										.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	S	I	I	S	Q	H	I	L	G	R	P	L	T	E	D	E	V	I	S	D	P	A	A	G	S	G	N	L	L	A	T	V	S	A	G	F	N	N	V	X	P	R	Q	I	W	A	N	D	I	E	T	L	F	L	E	L	L	S	I	R	L	G	L	L	F	P	Q	L	V	S	S	N	N	A	P	T	I	T
Template Known Secondary structure													S				T	T						T	T		T	T	S									T	S	T	T			G	G	G						S		G	G	G										T	T	S	T	T	T		B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.																			.	.	230	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	F	D	G	R	V	F	G	A	A	V	P	E	M	F	D	A	I	L	L	D	A	P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	D	S	A	F	H	A
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	D	V	C	S	L	N	P	E	D	F	A	N	V	S	V	V	V	X	N	P	P	Y	V	S	G	.	.	.	.	.	.	.	.	.	.	.	V	T	D	P	A	I	K	R	K	F	A	H	K	I	I	Q	L	T	G	N	R	P	Q	T	L	F	G	Q	I	G	V	E	A	L	F	L	E	L	V	T	E	L
Template Known Secondary structure					G	G	G			G	G	G	G	T	T									B			S	S	.	.	.	.	.	.	.	.	.	.	.																			S	S			S	S		S	S	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.												.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	P	G	G	T	L	V	Y	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	D	G	T	V	I	S	A	I	X
Template Known Secondary structure		S		T	T
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions