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Job DescriptionP76273
Confidence30.85%DateThu Jan 5 12:21:29 GMT 2012
Rank435Aligned Residues129
% Identity22%Templatec3pvcA_
PDB info PDB header:oxidoreductase, transferaseChain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis
Resolution2.31 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   120.........130.........140 .........150.........160.....
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Query Sequence  RVMDVAAAPGSKTTQISARMN. . . . . . . . . . . NEGAILANEFSASRVKVLHANISRC. . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  IFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCHR
Template Known Secondary structure 

TTS
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SS


TT
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S
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   61........70.........80.........90.........100.........110.........120.........130.........140
 
   166...170.........180..... ....190.........200.........210.........220.........230......
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Query Sequence  . . . . . GISNVALTHFDGRVFGAAVP. . . . EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL
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Template Sequence  ILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDG. . . . . . . FAPNPDXWNE. . . . . . . . . . . . . . QLFNAXARXT
Template Known Secondary structure  TTTTS
GGG

GGGTT

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   141........150.........160.........170......... 180......... 190.........
 
   237..240.........250.........260.........270......
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Query Sequence  RPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGD
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Template Sequence  RPGGTFSTFTAA. . . . . . . GFVRRGLQQAGFNVTKVKGFG
Template Known Secondary structure  S


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   202.......210... ......220.........230....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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