Job Description P76273 Confidence 100.00% Date Thu Jan 5 12:21:29 GMT 2012 Rank 3 Aligned Residues 441 % Identity 32% Template c3m6wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine Resolution 1.30 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		F	P	D	A	F	L	T	Q	M	R	E	A	M	P	S	T	L	S	F	D	D	F	L	A	A	C	.	Q	R	P	L	R	R	S	I	R	V	N	T	L	K	I	S	V	A	D	F	L	Q	L	T	A	P	Y	G	W	T	L	T	P	I	P	W	C	E	E	G	F	W	I	E	R	D	N	E	D	A	L	P	L
Query Conservation																												.
Alig confidence																	.	.										.																									.	.	.																						.	.	.	.
Template Conservation																	.	.																																			.	.	.																						.	.	.	.
Template Sequence		L	P	K	A	F	L	S	R	M	A	E	L	L	G	E	.	.	E	F	P	A	F	L	K	A	L	T	E	G	K	R	T	Y	G	L	R	V	N	T	L	K	L	P	P	E	A	F	Q	R	I	S	.	.	.	P	W	P	L	R	P	I	P	W	C	Q	E	G	F	Y	Y	P	E	E	A	R	.	.	.	.	P
Template Known Secondary structure															G	G	.	.	G										T	S										T	T	T											.	.	.	S	S						T	T									T	T			.	.	.	.
Template Predicted Secondary structure																	.	.																																			.	.	.																						.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.					.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	T	A	E	H	L	S	G	L	F	Y	I	Q	E	A	S	S	M	L	P	V	A	A	L	F	A	D	G	N	A	P	Q	R	V	M	D	V	A	A	A	P	G	S	K	T	T	Q	I	S	A	R	M	N	N	E	G	A	I	L	A	N	E	F	S	A	S	R	V	K	V	L	H	A	N	I	S	R	C	G
Query Conservation
Alig confidence																											.	.
Template Conservation																											.	.
Template Sequence		G	P	H	P	F	F	Y	A	G	L	Y	Y	I	Q	E	P	S	A	Q	A	V	G	V	L	L	.	.	D	P	K	P	G	E	R	V	L	D	L	A	A	A	P	G	G	K	T	T	H	L	A	A	R	M	G	G	K	G	L	L	L	A	N	E	V	D	G	K	R	V	R	G	L	L	E	N	V	E	R	W	G
Template Known Secondary structure		S	S	S					T	T	S						T	T	T								.	.				T	T						S	S		T	T											T	T	T		S							S
Template Predicted Secondary structure																											.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	N	V	A	L	T	H	F	D	G	R	V	F	G	A	A	V	P	E	M	F	D	A	I	L	L	D	A	P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	L	I	D	S	A	F	H	A	L	R	P	G	G	T	L	V	Y	S	T
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		A	P	L	.	A	V	T	Q	A	P	P	R	A	L	A	E	A	F	G	T	Y	F	H	R	V	L	L	D	A	P	C	S	G	E	G	M	F	R	K	D	R	E	A	A	R	H	W	G	P	S	A	P	K	R	M	A	E	V	Q	K	A	L	L	A	Q	A	S	R	L	L	G	P	G	G	V	L	V	Y	S	T
Template Known Secondary structure					.					S											S														G	G	G	T	T	T		T	T	S	G	G	G			T	T																		T	T
Template Predicted Secondary structure					.
Template SS confidence
		151	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.								.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.
Query Sequence		C	T	L	N	Q	E	E	N	E	A	V	C	L	W	L	K	E	T	Y	P	D	A	V	E	F	L	P	L	G	D	L	F	.	.	.	.	.	.	.	P	G	A	N	K	A	L	T	E	E	G	F	L	H	V	F	P	Q	I	Y	D	C	E	G	F	F	V	A	R	L	R	K	T	Q	A	I	P	A	L	P	A
Query Conservation																																		.	.	.	.	.	.	.
Alig confidence																							.											.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		C	T	F	A	P	E	E	N	E	G	V	V	A	H	F	L	K	A	H	P	E	.	F	R	L	E	D	A	R	L	H	P	L	F	A	P	G	V	P	E	W	G	E	G	N	P	E	L	L	K	T	A	R	L	W	P	H	R	L	E	G	E	G	H	F	L	A	R	F	R	K	E	G	G	A	W	S	T	P	R
Template Known Secondary structure		S				G	G	G	T												T	T	.									S	T	T	S					G	G	G	T	T	T		G	G	G	G	G	S					T	T	T	S	S	S	S											S
Template Predicted Secondary structure																							.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	Y	K	V	G	N	F	P	F	S	P	V	K	D	R	E	A	G	Q	I	R	Q	A	A	T	G	V	G	L	N	W	D	E	N	L	R	L	W	Q	R	D	K	E	L	W	L	F	P	V	G	I	E	A	L	I	G	K	V	R	F	S	R	L	G	I	K	L	A	E	T	H	N	K	G	Y	R	W	Q	H
Query Conservation
Alig confidence				.	.	.	.	.	.																										.	.																							.
Template Conservation				.	.	.	.	.	.																										.	.																							.
Template Sequence		L	E	.	.	.	.	.	.	R	P	S	P	L	S	Q	E	A	L	R	A	F	R	G	F	L	E	E	A	G	L	T	L	E	.	.	G	P	V	L	D	R	A	G	H	L	Y	L	L	P	E	G	L	P	T	L	L	G	.	L	K	A	P	A	P	G	L	Y	L	G	K	V	Q	K	G	R	F	L	P	A	R
Template Known Secondary structure		B		.	.	.	.	.	.																					T					.	.	S						T	T							T	T		B			T	T	.	S			S	B	S	S								T	T					B
Template Predicted Secondary structure				.	.	.	.	.	.																										.	.																							.
Template SS confidence
		309	310							.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.			.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.					.	410	.	.	.	.	.	.	.	.	.			420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.				440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.												.	.																					.	.	.																															.
Query SS confidence											.	.	.	.												.	.																					.	.	.																															.
Query Sequence		E	A	V	I	A	L	A	S	P	.	.	.	.	D	N	M	N	A	F	E	L	T	P	Q	.	.	E	A	E	E	W	Y	R	G	R	D	V	Y	P	Q	A	A	P	V	A	D	.	.	.	D	V	L	V	T	F	Q	H	Q	P	I	G	L	A	K	R	I	G	S	R	L	K	N	S	Y	P	R	E	L	V	.
Query Conservation											.	.	.	.												.	.																					.	.	.																															.
Alig confidence											.	.	.	.												.	.																					.	.	.																							.	.	.						.
Template Conservation																																																																									.	.	.
Template Sequence		A	L	A	L	A	F	G	A	T	L	P	W	P	E	G	L	P	R	L	A	L	T	P	E	D	P	R	A	L	A	F	A	T	G	E	G	V	A	W	E	G	E	D	H	P	L	A	L	V	V	L	K	T	A	A	G	E	F	P	L	D	F	G	K	A	K	R	G	V	L	R	.	.	.	P	V	G	V	G	L
Template Known Secondary structure							B	T	T	T	B				T	T	S							T	T	S								T	T							S													T	T												T	T				.	.	.				B
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450				.	.	.	.	.	.
		470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	H	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		457	.	.	460