Job Description P76273 Confidence 100.00% Date Thu Jan 5 12:21:29 GMT 2012 Rank 2 Aligned Residues 434 % Identity 29% Template c3m4xA_ PDB info PDB header:transferase Chain: A: PDB Molecule:nol1/nop2/sun family protein; PDBTitle: structure of a ribosomal methyltransferase Resolution 2.28 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		Y	F	P	D	A	F	L	T	Q	M	R	E	A	M	P	S	T	L	S	F	D	D	F	L	A	A	C	.	Q	R	P	L	R	R	S	I	R	V	N	T	L	K	I	S	V	A	D	F	L	Q	L	T	A	P	Y	G	W	T	L	T	P	I	P	W	C	E	E	G	F	W	I	E	R	D	N	E	D	A	L	P
Query Conservation																													.
Alig confidence																		.	.										.																													.	.																	.	.	.	.	.	.
Template Conservation																		.	.																																							.	.																	.	.	.	.	.	.
Template Sequence		T	L	P	Q	Q	F	I	K	K	Y	R	L	L	L	G	E	.	.	E	A	S	D	F	F	S	A	L	E	Q	G	S	V	K	K	G	F	R	W	N	P	L	K	P	A	G	L	D	X	V	Q	T	Y	H	S	E	E	.	.	L	Q	P	A	P	Y	S	N	E	G	F	L	G	T	V	N	.	.	.	.	.	.
Template Known Secondary structure																G	G	.	.	G																					T	T	S	T	T									T		S	S	.	.			B		T	T		T	T				S				.	.	.	.	.	.
Template Predicted Secondary structure																		.	.																																							.	.																	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	S	T	A	E	H	L	S	G	L	F	Y	I	Q	E	A	S	S	M	L	P	V	A	A	L	F	A	D	G	N	A	P	Q	R	V	M	D	V	A	A	A	P	G	S	K	T	T	Q	I	S	A	R	M	N	N	E	G	A	I	L	A	N	E	F	S	A	S	R	V	K	V	L	H	A	N	I	S	R	C
Query Conservation
Alig confidence		.																										.	.
Template Conservation		.																										.	.
Template Sequence		.	G	K	S	F	L	H	Q	A	G	Y	E	Y	S	Q	E	P	S	A	X	I	V	G	T	A	A	.	.	A	A	K	P	G	E	K	V	L	D	L	C	A	A	P	G	G	K	S	T	Q	L	A	A	Q	X	K	G	K	G	L	L	V	T	N	E	I	F	P	K	R	A	K	I	L	S	E	N	I	E	R	W
Template Known Secondary structure		.	T	T	S					T	T	S						T	T	T								.	.				T	T						S	S		T	T												T	T		S							S	S
Template Predicted Secondary structure		.																										.	.
Template SS confidence
			77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	S	N	V	A	L	T	H	F	D	G	R	V	F	G	A	A	V	P	E	M	F	D	A	I	L	L	D	A	P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	L	I	D	S	A	F	H	A	L	R	P	G	G	T	L	V	Y	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	S	N	A	I	V	T	N	H	A	P	A	E	L	V	P	H	F	S	G	F	F	D	R	I	V	V	D	A	P	C	S	G	E	G	X	F	R	K	D	P	N	A	I	K	E	W	T	E	E	S	P	L	Y	C	Q	K	R	Q	Q	E	I	L	S	S	A	I	K	X	L	K	N	K	G	Q	L	I	Y	S
Template Known Secondary structure		T		S	S																T	T														G	G	G	T	T	T										T	T																			T
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		T	C	T	L	N	Q	E	E	N	E	A	V	C	L	W	L	K	E	T	Y	P	D	A	V	E	F	L	P	L	G	D	L	F	P	G	A	N	K	A	L	.	.	.	.	T	E	E	G	F	L	H	V	F	P	Q	I	Y	D	C	E	G	F	F	V	A	R	L	R	K	T	Q	A	I	P	A	L	P	A	P	K
Query Conservation																																										.	.	.	.
Alig confidence																																										.	.	.	.																																.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		T	C	T	F	A	P	E	E	N	E	E	I	I	S	W	L	V	E	N	Y	P	V	T	I	E	E	I	P	L	T	Q	S	V	S	S	G	R	S	E	W	G	S	V	A	G	L	E	K	T	I	R	I	W	P	H	K	D	Q	G	E	G	H	F	V	A	K	L	T	F	H	G	Q	N	Q	X	.	.	.	.	.
Template Known Secondary structure			S				G	G	G	T											S	S									S	S							G	G	G	S	S	S	T	T	G	G	G	S					T	T	T	S	S	S	S											S					.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	V	G	N	F	P	F	S	P	V	K	D	R	E	A	G	Q	I	R	Q	A	A	T	G	V	G	L	N	W	D	E	N	L	R	L	W	Q	R	D	K	E	L	W	L	F	P	V	G	I	E	A	L	I	G	K	V	R	F	S	R	L	G	I	K	L	A	E	T	H	N	K	G	Y	R	W	Q	H	E	A
Query Conservation
Alig confidence		.	.	.	.	.	.																			.	.																														.
Template Conservation		.	.	.	.	.	.																			.	.																														.
Template Sequence		.	.	.	.	.	.	H	K	V	Q	X	T	K	E	Q	E	K	L	W	T	E	F	S	N	.	.	D	F	H	Y	E	A	T	G	R	L	L	V	F	N	D	H	L	W	E	V	P	E	L	A	P	S	L	D	G	.	L	K	V	V	R	T	G	L	H	L	G	D	F	K	K	N	R	F	E	P	S	Y	A	L
Template Known Secondary structure		.	.	.	.	.	.				S															.	.		T	T					S						T	T							T	T					T	T	.							S								T	T
Template Predicted Secondary structure		.	.	.	.	.	.																			.	.																														.
Template SS confidence
								309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	A	L	A	S	P	D	N	M	N	A	F	E	L	T	P	Q	E	A	E	E	W	Y	R	G	R	D	V	Y	P	Q	A	A	P	V	A	D	D	V	L	V	T	F	Q	H	Q	P	I	G	L	A	K	R	I	G	S	R	L	K	N	S	Y	P	R	E	L	V
Query Conservation
Alig confidence																																				.	.
Template Conservation																																				.	.
Template Sequence		A	L	A	T	K	K	I	E	N	I	P	C	L	P	I	T	Q	K	E	W	Q	S	Y	T	A	G	E	T	F	Q	R	D	G	N	.	.	Q	G	W	V	L	L	V	L	D	K	I	P	V	G	F	G	K	Q	V	K	G	T	V	K	N	F	F	P	K	G	L	R
Template Known Secondary structure				T				G	G	G	S																T						S			.	.									T	T										T	T						S		G	G	G
Template Predicted Secondary structure																																				.	.
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.			.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.