Job Description P76273 Confidence 96.93% Date Thu Jan 5 12:21:29 GMT 2012 Rank 276 Aligned Residues 134 % Identity 16% Template c3lkzB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:non-structural protein 5; PDBTitle: structural and functional analyses of a conserved hydrophobic pocket2 of flavivirus methyltransferase Resolution 2.00 Å

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		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.									150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.
Query Sequence		D	G	N	A	P	Q	R	V	M	D	V	A	A	A	P	G	S	K	T	T	Q	I	S	A	R	M	N	N	E	G	A	I	L	A	N	E	.	.	.	.	.	.	.	.	F	S	A	S	R	V	K	V	L	H	A	N	I	S	R	C	G	I	S	N	V	A	L	T	H	F	D	G	R	V	F	G	A	A	V	P
Query Conservation																																						.	.	.	.	.	.	.	.
Alig confidence																											.											.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	E	P	V	G	K	V	I	D	L	G	C	G	R	G	G	W	C	Y	Y	M	A	T	Q	.	K	R	V	Q	E	V	R	G	Y	T	K	G	G	P	G	H	E	E	P	Q	L	.	.	.	.	.	.	.	.	.	.	.	V	Q	S	Y	G	W	N	I	V	T	M	K	S	G	V	D	V	F	Y	R	P	S
Template Known Secondary structure		S											T		T	T								T	T		.	T	T											S	T	T	S						.	.	.	.	.	.	.	.	.	.	.			B	T	T	G	G	G						S			T	T	S	S
Template Predicted Secondary structure																											.																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.												.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		E	M	F	D	A	I	L	L	D	A	P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	L	I	D	S	A	F	H	A	L	R	P	G	.	G	T	L	V	Y	S	T	C	T	L	N	Q	E	E	N	E	A	V	C	L	W	L	K	E	T
Query Conservation																																																								.
Alig confidence															.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation															.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	C	C	D	T	L	L	C	D	I	G	E	S	.	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	V	E	E	H	R	T	I	R	V	L	E	M	V	E	D	W	L	H	R	G	P	R	E	F	C	V	K	V	L	C	P	Y	M	P	K	V	I	E	K	M	E	L	L	Q	R	R
Template Known Secondary structure					S										.		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	T										S		T	T	S
Template Predicted Secondary structure															.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.																.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		265	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	D	A	V	E	F	L	P	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	G	G	L	V	R	N	P	L	S
Template Known Secondary structure										T	T	S
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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