Job Description P76273 Confidence 96.07% Date Thu Jan 5 12:21:29 GMT 2012 Rank 294 Aligned Residues 129 % Identity 16% Template c3evaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rna-directed rna polymerase ns5; PDBTitle: crystal structure of yellow fever virus methyltransferase complexed2 with s-adenosyl-l-homocysteine Resolution 1.50 Å

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		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.													.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	N	A	P	Q	R	V	M	D	V	A	A	A	P	G	S	K	T	T	Q	I	S	A	R	M	N	N	E	G	A	I	L	A	N	E	F	S	A	S	R	V	K	V	L	H	A	N	I	S	R	C	G	I	S	N	V	A	.	.	.	.	.	.	.	.	.	.	.	.	L	T	H	F	D	G	R	V	F	G	A
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	L	E	G	R	V	I	D	L	G	C	G	R	G	G	W	C	Y	Y	A	A	A	Q	.	K	E	V	S	G	V	K	G	F	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	D	G	H	E	K	P	M	N	V	Q	S	L	G	W	N	I	I	T	F	K	D	K	T	D	I	H	R
Template Known Secondary structure		S										T		T	T									T	S	.	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T									B	T	T	G	G	G						S			T	T	S
Template Predicted Secondary structure																										.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.																.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		A	V	P	E	M	F	D	A	I	L	L	D	A	P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	L	I	D	S	A	F	H	.	A	L	R	P	G	G	T	L	V	Y	S	T	C	T	L	N	Q	E	E	N	E	A	V	C	L	W	L
Query Conservation																																																						.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	P	V	K	C	D	T	L	L	C	D	I	G	E	S	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	E	G	E	R	T	V	R	V	L	D	T	V	E	K	W	L	A	C	G	V	D	N	F	C	V	K	V	L	A	P	Y	M	P	D	V	L	E	K	L	E	L	L
Template Known Secondary structure		S						S											S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T			S							S		T	T	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.																	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	T	Y	P	D	A	V	E	F	L	P	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	R	R	F	G	G	T	V	I	R	N	P	L	S
Template Known Secondary structure													T	T	S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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