Job Description P76273 Confidence 74.31% Date Thu Jan 5 12:21:29 GMT 2012 Rank 358 Aligned Residues 133 % Identity 18% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.				.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																			.						.	.	.										.	.	.												.																	.
Query SS confidence																			.						.	.	.										.	.	.												.																	.
Query Sequence		A	D	G	N	A	P	Q	R	V	M	D	V	A	A	A	P	G	.	S	K	T	T	Q	.	.	.	I	S	A	R	M	N	N	E	G	.	.	.	A	I	L	A	N	E	F	S	A	S	R	.	V	K	V	L	H	A	N	I	S	R	C	G	I	S	N	V	.	A	L	T	H	F	D	G	R	V	F	G	A	A
Query Conservation																			.						.	.	.										.	.	.												.																	.
Alig confidence																			.						.	.	.										.	.	.												.																	.
Template Conservation
Template Sequence		I	E	I	K	E	K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E
Template Known Secondary structure						S	S	S									T	T	S	S														T	T	T											S	S	T											G	G	G	T							T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
							184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	V	P	E	M	F	D	A	I	L	L	D	A	P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	L	I	D	S	A	F	H	A	L	R	P	G	G	T	L	V	Y	S	T	C	T	L	N	Q	E	E	N	E	A	V	C
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.														.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																				.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Sequence		G	V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	.	.	.	.	G	R	H	K	E	D	K	A	L	I	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	T	I	G	Q	.	Q	A	Y	N	Q	A
Template Known Secondary structure									T	T		S								.	.	.	.			S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S								G	G	G	G	G	.	G
Template Predicted Secondary structure																				.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.					.	.	.	.	.	.	.	.	200	.	.	.																	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.
		259	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	L	K	E	T	Y	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	F	K	E	A	T	P
Template Known Secondary structure							S		T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions