Job Description P76273 Confidence 99.52% Date Thu Jan 5 12:21:29 GMT 2012 Rank 50 Aligned Residues 156 % Identity 22% Template c3bt7A_ PDB info PDB header:transferase/rna Chain: A: PDB Molecule:trna (uracil-5-)-methyltransferase; PDBTitle: structure of e. coli 5-methyluridine methyltransferase trma2 in complex with 19 nucleotide t-arm analogue Resolution 2.43 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	M	L	P	V	A	A	L	F	A	D	G	N	A	P	Q	R	V	M	D	V	A	A	A	P	G	S	K	T	T	Q	I	S	A	R	M	N	N	E	G	A	I	L	A	N	E	F	S	A	S	R	V	K	V	L	H	A	N	I	S	R	C	G	I	S	N	V	A	L	T	H	F	D	G	R	V	F	G	A
Query Conservation
Alig confidence																																						.	.	.
Template Conservation																																						.	.	.
Template Sequence		N	I	Q	M	L	E	W	A	L	D	V	T	K	G	S	K	G	D	L	L	E	L	Y	C	G	N	G	N	F	S	L	A	L	A	R	N	.	.	.	F	D	R	V	L	A	T	E	I	A	K	P	S	V	A	A	A	Q	Y	N	I	A	A	N	H	I	D	N	V	Q	I	I	R	M	A	A	E	E	F	T	Q
Template Known Secondary structure													T	T	T			S						S		T	T	S							G	G	G	.	.	.	S	S																						T	T			S								S
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		183	.	.	.																.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	D	A	I	L	L	D	A	P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	L	I	D	S	A	F	H	A	L	R	P	G	G	T	L	V	Y	S	T	C
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	M	N	G	V	R	E	F	N	R	L	Q	G	I	D	L	K	S	Y	Q	C	E	T	I	F	V	D	P	P	R	S	G	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	T	E	K	M	V	Q	A	Y	P	R	I	L	Y	I	S	C
Template Known Secondary structure				S	S					T	T	G	G	G	S		G	G	G												T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S	S							S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.																													.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	N	Q	E	E	N	E	A	V	C	L	W	L	K	E	T	Y	P	D	A	V	E	F	L	P	L	G	D	L	F	P	G	A	N	K	A	L	T	E	E	G	F	L	H	V	F	P	Q	I	Y	D	C	E	G	F	F	V	A	R	L	R	K	T
Query Conservation
Alig confidence		.	.																		.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation		.	.																		.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Sequence		.	.	N	P	E	T	L	C	K	N	L	E	T	L	S	Q	T	H	K	.	V	E	R	L	A	L	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	P	Y	T	H	H	M	Q	C	.	.	G	V	L	L	T	A	K
Template Known Secondary structure		.	.																		.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	T	T	S	S					.	.
Template Predicted Secondary structure		.	.																		.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template SS confidence
				325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.																		350	.	.	.	.	.	.	.	.	.			360	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions