Job Description P76273 Confidence 98.30% Date Thu Jan 5 12:21:29 GMT 2012 Rank 212 Aligned Residues 140 % Identity 21% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		S	S	M	L	P	V	A	A	L	F	A	D	G	N	A	P	Q	R	V	M	D	V	A	A	A	P	G	S	K	T	T	Q	I	S	A	R	M	N	N	E	G	A	I	L	A	N	E	F	S	A	S	R	V	K	V	L	H	A	N	I	S	R	C	G	I	.	.	.	.	S	N	V	A	L	T	H	F	D	G	R
Query Conservation																																																																			.	.	.	.
Alig confidence																	.																					.																													.	.	.	.
Template Conservation																	.																					.
Template Sequence		Q	E	X	I	T	H	L	P	L	C	S	I	P	N	P	.	K	K	V	L	V	I	G	G	G	D	G	G	V	L	R	E	V	A	R	H	.	A	S	I	E	Q	I	D	X	C	E	I	D	K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	G	Y	E	D	P	R	V	N	L	V	I	G	D	G	V
Template Known Secondary structure						T					T	T	S	S	S		.							S		S	S	S							T	T		.	T	T																						T	T	T	G	G	G	T	T		T	T						S
Template Predicted Secondary structure																	.																					.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		179	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		V	F	G	A	A	V	P	E	.	M	F	D	A	I	L	L	D	A	P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	L	I	D	S	A	F	H	A	L	R	P	G	G	T	L	V	Y	S	T	C	T	L	N	Q	E	E	N	E	A	V
Query Conservation										.
Alig confidence										.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		A	F	L	K	N	A	A	E	G	S	Y	D	A	V	I	V	D	S	S	D	P	I	G	P	A	K	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	K	P	F	F	Q	S	V	A	R	A	L	R	P	G	G	.	.	V	V	C	T	Q	A	E	S	L	W	L	H	X	D	I
Template Known Secondary structure						S	S		S	S												S	S	S	G	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S																.	.									T	T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.																			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		258	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	W	L	K	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	D	I	V	S	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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