Job Description P76273 Confidence 31.07% Date Thu Jan 5 12:21:29 GMT 2012 Rank 434 Aligned Residues 132 % Identity 19% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.							140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.																.																					.										.	.
Query SS confidence																												.	.	.	.	.	.																.																					.										.	.
Query Sequence		D	G	N	A	P	Q	R	V	M	D	V	A	A	A	P	G	S	K	T	T	Q	I	S	A	R	M	.	.	.	.	.	.	N	N	E	G	A	I	L	A	N	E	F	S	A	S	R	.	V	K	V	L	H	A	N	I	S	R	C	G	I	S	N	V	A	L	T	H	.	F	D	G	R	V	F	G	A	A	.	.
Query Conservation																												.	.	.	.	.	.																.																					.										.	.
Alig confidence																												.	.	.	.	.	.																.																					.										.	.
Template Conservation
Template Sequence		T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V
Template Known Secondary structure					S	S								S	T	T	S	S															T	T											S	S	S														T										S
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
					184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	V	P	E	M	F	D	A	I	L	L	D	A	P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	L	I	D	S	A	F	H	A	L	R	P	G	G	T	L	V	Y	S	T	C	T	L	N	Q	E	E	N	E	A	V	C	L	W
Query Conservation		.	.	.
Alig confidence		.	.	.														.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																		.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Sequence		E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	.	.	.	.	G	R	H	K	Q	E	D	S	L	F	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	Q	.	A	C	E	A	Q	A	K	A
Template Known Secondary structure							T	T										.	.	.	.				T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S								T	T			T	.	T
Template Predicted Secondary structure																		.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.																	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.
		261	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	E	T	Y	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	D	K	V	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions