Job Description P76273 Confidence 52.37% Date Thu Jan 5 12:21:29 GMT 2012 Rank 381 Aligned Residues 116 % Identity 20% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		130	.	.	.	.	.	.	.	.	.								140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.																.																					.										.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.																.																					.										.	.	.	.	.
Query Sequence		S	K	T	T	Q	I	S	A	R	M	.	.	.	.	.	.	.	N	N	E	G	A	I	L	A	N	E	F	S	A	S	R	.	V	K	V	L	H	A	N	I	S	R	C	G	I	S	N	V	A	L	T	H	.	F	D	G	R	V	F	G	A	A	.	.	.	.	.	V	P	E	M	F	D	A	I	L	L	D	A
Query Conservation												.	.	.	.	.	.	.																.																					.										.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.																.																					.										.	.	.	.	.
Template Conservation
Template Sequence		G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T
Template Known Secondary structure		S	S	T	T	T										T	S	S	S					B						S	S	S		S											T	T							S	S				T	T													T	T		S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	L	I	D	S	A	F	H	A	L	R	P	G	G	T	L	V	Y	S	T	C	T	L	N	Q	E	E	N	E	A	V	C	L	W	L	K	E	T	Y	P
Query Conservation
Alig confidence			.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation			.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Sequence		A	.	.	.	.	G	R	L	H	V	D	E	A	M	M	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	.	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P
Template Known Secondary structure			.	.	.	.				S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S								T	T	T	G	.	G	G	G									T	T		S
Template Predicted Secondary structure			.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template SS confidence
		192					.	.	.	.	.	.	.	200	.	.	.	.																	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions