Job Description P76273 Confidence 85.60% Date Thu Jan 5 12:21:29 GMT 2012 Rank 347 Aligned Residues 133 % Identity 19% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.							.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.
Predicted Secondary structure																			.										.	.	.	.	.	.																	.																					.
Query SS confidence																			.										.	.	.	.	.	.																	.																					.
Query Sequence		A	D	G	N	A	P	Q	R	V	M	D	V	A	A	A	P	G	.	S	K	T	T	Q	I	S	A	R	.	.	.	.	.	.	M	N	N	E	G	A	I	L	A	N	E	F	S	A	S	R	.	V	K	V	L	H	A	N	I	S	R	C	G	I	S	N	V	A	L	T	H	.	F	D	G	R	V	F	G	A	A
Query Conservation																			.										.	.	.	.	.	.																	.																					.
Alig confidence																			.										.	.	.	.	.	.																	.																					.
Template Conservation
Template Sequence		L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R
Template Known Secondary structure							S	S									T	T	S	S															T	T										S	S																T								T	T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		184						.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.
Query SS confidence			.	.	.	.	.
Query Sequence		V	.	.	.	.	.	P	E	M	F	D	A	I	L	L	D	A	P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	L	I	D	S	A	F	H	A	L	R	P	G	G	T	L	V	Y	S	T	C	T	L	N	Q	E	E	N	E	A	V	C
Query Conservation			.	.	.	.	.
Alig confidence			.	.	.	.	.													.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																				.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Sequence		V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	.	.	.	.	G	R	L	Q	I	D	E	P	L	M	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	.	E	A	L	S	V	A
Template Known Secondary structure										T		S								.	.	.	.			S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S								S	S	S		S	.
Template Predicted Secondary structure																				.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.																	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230
		259	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	L	K	E	T	Y	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	F	D	E	K	V	G
Template Known Secondary structure								S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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