Job Description P76273 Confidence 80.85% Date Thu Jan 5 12:21:29 GMT 2012 Rank 352 Aligned Residues 166 % Identity 16% Template c1sgvA_ PDB info PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) Resolution 1.90 Å

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		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	F	P	Q	I	Y	D	C	E	G	F	F	V	A	R	L	R	K	T	Q	A	I	P	A	L	P	A	P	K	Y	K	V	G	N	F	P	F	S	P	V	K	D	R	E	A	G	Q	I	R	Q	A	A	T	G	V	G	L	N	W	D	E	N	L	R	L	W	Q	R	D	K	E	L	W	L	F	P	V	G	I
Query Conservation
Alig confidence																																																																.	.	.
Template Conservation																																																																.	.	.
Template Sequence		K	I	L	G	L	L	T	A	A	P	K	S	Y	A	A	T	I	R	L	G	Q	T	T	S	T	E	D	A	E	G	Q	V	L	Q	S	V	P	A	K	H	L	T	I	E	A	I	D	A	A	M	E	R	L	R	G	E	I	L	E	A	R	P	.	.	.	I	R	I	D	R	F	E	L	L	A	A	R	R	R	D
Template Known Secondary structure		G	G	G	G	G	T	T	T	S											T				T	T	S	B	T	T	S									T	T													T										.	.	.															T
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		372	.	.	.	.	.	.	.	380	.																			.	.	.	.	.	.	.	.	390	.	.	.	.	.																	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	L	I	G	K	V	R	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	G	I	K	L	A	E	T	H	N	K	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	W	Q	H	E	A	V	I	A	L	A	S	P	D	N	M	N	A	F	E	L	T
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	I	D	I	D	V	E	I	D	C	S	S	G	T	Y	I	R	A	L	A	R	D	L	G	D	A	L	G	V	G	G	H	V	T	A	L	R	R	T	R	V	G	R	F	E	L	D	Q	A	R	S	L	D	D	L	A	E	R	P	A	L	S	L	S	L	D	E	A	C	L	L	M	F	A	R	R	D	L	T
Template Known Secondary structure		T											S			T	T													T	S													T	T			G	G	G		B								S				S											S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	E	A	E	E	W	Y	R	G	R	D	V	Y	P	Q	A	A	P	V	A	D	D	V	L	V	T	F	Q	H	Q	P	I	G	L	A	K	R	I	G	S	R	L	K
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		A	A	E	A	S	A	A	A	N	G	R	S	L	P	.	A	V	G	I	D	G	V	Y	A	A	C	D	A	D	G	R	V	I	A	L	L	R	D	E	G	S	R	T	R
Template Known Secondary structure										T	T				B	.						S							T	T	S										T	T
Template Predicted Secondary structure																.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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