Job Description P0AFG8 Confidence 99.94% Date Thu Jan 5 11:26:11 GMT 2012 Rank 33 Aligned Residues 316 % Identity 20% Template d1w85a_ SCOP info Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Branched-chain alpha-keto acid dehydrogenase PP module Resolution 2.0

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		N	T	I	P	V	E	E	Q	P	E	Y	P	G	N	L	E	L	E	R	R	I	R	S	.	.	A	I	R	W	N	A	I	M	T	V	L	R	A	S	K	K	D	L	E	L	G	G	H	M	A	S	F	Q	S	S	A	T	I	Y	D	V	C	F	N	H	F	F	R	A	R	N	E	Q	D	G	G	D	L	V	Y
Query Conservation																									.	.
Alig confidence														.											.	.																		.	.		.																								.	.	.	.	.	.	.
Template Conservation														.																														.	.		.																								.	.	.	.	.	.	.
Template Sequence		E	V	V	N	E	E	A	M	P	E	L	S	.	D	E	Q	L	K	E	L	M	R	R	M	V	Y	T	R	I	L	D	Q	R	S	I	S	L	N	R	Q	G	R	.	.	L	.	G	F	Y	A	P	T	A	G	Q	E	A	S	Q	I	A	S	H	F	A	L	E	K	E	.	.	.	.	.	.	.	D	F	I	L
Template Known Secondary structure			B	S		G	G	G						.																											T	T	S	.	.		.		S					T	T											T			T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure														.																														.	.		.																								.	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.								.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	G	H	I	S	P	G	V	Y	A	R	A	F	L	E	G	R	L	T	Q	E	Q	L	D	N	F	R	Q	E	V	H	G	N	G	L	S	S	Y	P	H	P	K	L	M	P	E	F	W	Q	F	P	T	V	S	M	G	L	G	P	I	G	A	I	Y	Q	A	K	F	L	K	Y	L	E	H	R	G	L	K	D
Query Conservation
Alig confidence			.					.	.	.																																	.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Conservation			.					.	.	.																																	.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Sequence		P	.	G	Y	R	D	.	.	.	V	P	Q	I	I	W	H	G	L	P	L	Y	Q	A	F	L	F	S	R	G	H	F	H	G	N	Q	I	P	E	G	V	N	.	.	.	.	.	.	.	V	L	P	P	Q	I	I	I	G	A	Q	Y	I	Q	A	A	G	V	A	L	G	L	K	M	.	.	.	.	.	.	.	R
Template Known Secondary structure			.		S	S		.	.	.							T	T												T		G	G	G	G				T	T			.	.	.	.	.	.	.	B						S	T	T																.	.	.	.	.	.	.	T
Template Predicted Secondary structure			.					.	.	.																																	.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Template SS confidence
		100		.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.								.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160								.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	K	Q	T	V	Y	A	F	L	G	D	G	E	M	D	E	P	E	S	K	G	A	I	T	I	A	T	R	E	K	L	D	N	L	V	F	V	I	N	C	N	L	Q	R	L	D	G	P	V	T	G	N	G	K	I	I	N	E	L	E	G	I	F	E	G	A	G	W	N	V	I	K	V	M	W	G	S	R	W
Query Conservation
Alig confidence																																		.																								.																		.	.	.	.	.	.
Template Conservation																																		.																								.																		.	.	.	.	.	.
Template Sequence		G	K	K	A	V	A	I	T	Y	T	G	D	G	G	T	S	Q	G	D	F	Y	E	G	I	N	F	A	G	A	F	K	A	.	P	A	I	F	V	V	Q	N	N	R	F	A	I	S	T	P	V	E	K	Q	T	V	A	.	K	T	L	A	Q	K	A	V	A	A	G	I	P	G	I	Q	V	.	.	.	.	.	.
Template Known Secondary structure		T		S									T	G	G	G	G	S													T	T		.										S			T	T			G	G	G	T		S		.	S		S	G	G	G	G	G	G	T	T							.	.	.	.	.	.
Template Predicted Secondary structure																																		.																								.																		.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	L	L	R	K	D	T	S	G	K	L	I	Q	L	M	N	E	T	V	D	G	D	Y	Q	T	F	K	S	K	D	G	A	Y	V	R	E	H	F	F	G	K	Y	P	E	T	A	A	L	V	A	D	W	T	D	E	Q	I	W	A	L	N	R	G	G	H	D	P	K	K	I	Y	A	A	F	K	K	A	Q	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	M	D	P	L	A	V	Y	A	A	V	K	A	A	R	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																	234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		380				.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		T	.	.	.	K	G	K	A	T	V	I	L	A	H	T	I	K	G	Y	G	M	G	D	A	A	E	G	K	N	I	A	H	Q	V	K	K	M	N	M	D	G	V	R	H	I	R	D	R	F	N	V	P	V	S	D	A	D	I	E	K	L	P	Y	I	T	F	P	E	G	S	E	E	H	T	Y	L	H	A	Q	R
Query Conservation			.	.	.
Alig confidence			.	.	.																						.	.																							.	.
Template Conservation																											.	.																							.	.
Template Sequence		R	A	I	N	G	E	G	P	T	L	I	E	T	L	C	F	R	Y	G	P	H	T	M	S	G	.	.	D	S	K	E	L	E	N	E	W	A	K	K	D	P	L	V	R	F	R	K	F	L	.	.	E	A	K	G	L	W	S	E	E	E	E	N	N	V	I	E	Q	A	K	E	E	I	K	E	A	I	K	K	A
Template Known Secondary structure					T	T	S												S	S		S		S	S		.	.											T	T											.	.			T	T
Template Predicted Secondary structure																											.	.																							.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	L	H	G	Y	L	P	S	R	Q	P	N	F	T	E	K	L	E	L	P	S	L	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	T	P	K	Q	K	V	T	D	L	I	S	I	M	F	E	E	L	P	F	N	L	K	E
Template Known Secondary structure			T	S											T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions