Job Description P0AFG8 Confidence 99.90% Date Thu Jan 5 11:26:11 GMT 2012 Rank 38 Aligned Residues 174 % Identity 15% Template d1umdb1 SCOP info Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Branched-chain alpha-keto acid dehydrogenase Pyr module Resolution 1.90

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		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.		.	.	.	.	.	.	.	.	570	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		I	S	T	T	I	A	F	V	R	A	L	N	V	M	L	K	N	K	S	I	K	D	R	L	V	P	I	I	A	D	E	A	R	T	F	G	M	E	G	L	F	R	Q	I	G	I	Y	S	P	N	G	Q	Q	Y	T	P	Q	D	R	E	Q	V	A	Y	Y	K	E	D	E	.	K	G	Q	I	L	Q	E	G	I	N
Query Conservation																																																																							.
Alig confidence																			.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template Conservation																			.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	T	M	V	Q	A	L	N	R	A	L	D	E	E	M	A	K	.	.	.	D	P	R	V	V	V	L	G	E	D	V	G	K	R	G	G	V	F	L	V	T	E	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	K	Y	G	P	D	R	V	M	D	T	P	L	S
Template Known Secondary structure																			.	.	.		T	T						T	T		S	T	T			T	T	S	T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	T						S
Template Predicted Secondary structure																			.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20				.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																						.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.		.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.								.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
Predicted Secondary structure																												.																						.	.	.	.	.	.	.
Query SS confidence																												.																						.	.	.	.	.	.	.
Query Sequence		E	L	G	A	G	C	S	W	L	A	A	A	T	S	Y	S	T	N	N	L	P	M	I	P	F	Y	.	I	Y	Y	S	M	F	G	F	Q	R	I	G	D	L	C	W	A	A	G	D	Q	.	.	.	.	.	.	.	Q	A	R	G	F	L	I	G	G	T	S	G	R	T	T	L	N	G	E	G	L	Q	H	E	D
Query Conservation																												.																						.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.							.																						.	.	.	.	.	.	.														.	.	.
Template Conservation																.	.	.	.	.	.																																																	.	.	.
Template Sequence		E	A	A	I	V	G	A	A	L	G	M	A	A	H	.	.	.	.	.	.	G	L	R	P	V	A	E	I	Q	F	A	D	Y	I	F	P	G	F	D	Q	L	V	S	Q	V	A	K	L	R	Y	R	S	G	G	Q	F	T	A	P	L	V	V	R	M	P	S	G	G	.	.	.	G	V	R	G	G	H	H	H	S
Template Known Secondary structure																.	.	.	.	.	.	T								S	S	G	G	G		G	G	G							T	T	T	T					T	T	T	S	S												S	.	.	.	S	S	S		G	G	G	S	S
Template Predicted Secondary structure																.	.	.	.	.	.																																																	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.							.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	S	H	I	Q	S	L	T	I	P	N	C	I	S	Y	D	P	A	Y	A	Y	E	V	A	V	I	M	H	D	G	L	E	R	M	Y	G	E	K	Q	E	N	V	Y	Y	Y	I	T	T	L	N	E	N	Y	H	M	P	A	M	P	E
Query Conservation
Alig confidence																																			.	.	.	.	.
Template Conservation																																			.	.	.	.	.
Template Sequence		Q	S	P	E	A	H	F	V	H	T	A	G	L	K	V	V	A	V	S	T	P	Y	D	A	K	G	L	L	K	A	A	I	R	.	.	.	.	.	D	E	D	P	V	V	F	L	E	P	K	R	L	Y	R	S	V	K	E	E	V	P	E
Template Known Secondary structure										T	S	T	T								S														.	.	.	.	.		S	S								G	G	G	S	S	S
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.						.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions