Job Description P0AFG8 Confidence 99.90% Date Thu Jan 5 11:26:11 GMT 2012 Rank 37 Aligned Residues 262 % Identity 18% Template d1umda_ SCOP info Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Branched-chain alpha-keto acid dehydrogenase PP module Resolution 1.90

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.							.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																								.																										.	.	.	.	.	.
Query SS confidence																								.																										.	.	.	.	.	.
Query Sequence		N	Y	I	N	T	I	P	V	E	E	Q	P	E	Y	P	G	N	L	E	L	E	R	.	R	I	R	S	A	I	R	W	N	A	I	M	T	V	L	R	A	S	K	K	D	L	E	L	G	.	.	.	.	.	.	G	H	M	A	S	F	Q	S	S	A	T	I	Y	D	V	C	F	N	H	F	F	R	A	R	N	E
Query Conservation																								.																										.	.	.	.	.	.
Alig confidence																								.																						.	.			.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	E	G	E	W	L	G	D	F	P	L	D	L	E	G	E	K	L	R	R	L	Y	R	D	M	L	A	A	R	M	L	D	E	R	Y	T	I	L	I	R	T	G	K	.	.	T	S	F	I	A	P	A	A	G	H	E	A	A	Q	V	A	I	A	H	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	S		B			S	S																																T	T	S	.	.		S						T	T												S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		132	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																																.	.
Query SS confidence						.																																.	.
Query Sequence		Q	D	G	G	.	D	L	V	Y	F	Q	G	H	I	S	P	G	V	Y	A	R	A	F	L	E	G	R	L	T	Q	E	Q	L	D	N	F	.	.	R	Q	E	V	H	G	N	G	L	S	S	Y	P	H	P	K	L	M	P	E	F	W	Q	F	P	T	V	S	M	G	L	G	P	I	G	A	I	Y	Q	A	K	F
Query Conservation						.																																.	.
Alig confidence		.				.					.						.	.	.																			.	.
Template Conservation		.									.						.	.	.
Template Sequence		.	R	P	G	F	D	W	V	F	.	P	Y	Y	R	D	.	.	.	H	G	L	A	L	A	L	G	I	P	L	K	E	L	L	G	Q	M	L	A	T	K	A	D	P	N	K	G	R	Q	M	P	E	H	P	G	S	K	A	L	N	F	F	T	V	A	S	P	I	A	S	H	V	P	P	A	A	G	A	A	I	S
Template Known Secondary structure		.		T	T	T	S				.			T	T	T	.	.	.								T												T	B	T	T		T	T	T	T		S		S	S				B	T	T	T	T	B					S	S	T	T	T	T
Template Predicted Secondary structure		.									.						.	.	.
Template SS confidence
			85	.	.	.	.	90	.	.		.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	Y	L	E	H	R	G	L	K	D	T	S	K	Q	T	V	Y	A	F	L	G	D	G	E	M	D	E	P	E	S	K	G	A	I	T	I	A	T	R	E	K	L	D	N	L	V	F	V	I	N	C	N	L	Q	R	L	D	G	P	V	T	G	N	G	K	I	I	N	E	L	E	G	I	F	E	G	A	G	W
Query Conservation
Alig confidence					.	.	.	.	.	.	.																																			.																							.
Template Conservation					.	.	.	.	.	.	.																																			.																							.
Template Sequence		M	K	L	.	.	.	.	.	.	.	L	R	T	G	Q	V	A	V	C	T	F	G	D	G	A	T	S	E	G	D	W	Y	A	G	I	N	F	A	A	V	Q	G	A	P	.	A	V	F	I	A	E	N	N	F	Y	A	I	S	V	D	Y	R	H	Q	T	H	S	.	P	T	I	A	D	K	A	H	A	F	G	I
Template Known Secondary structure					.	.	.	.	.	.	.	T	T											T	G	G	G	G	S													T	T		S	.									S			T	T								S	S	.	S		S	G	G	G	G	G	G	T	T	S
Template Predicted Secondary structure					.	.	.	.	.	.	.																																			.																							.
Template SS confidence
		160	.	.								.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	I	K	V	M	W	G	S	R	W	D	E	L	L	R	K	D	T	S	G	K	L	I	Q	L	M	N	E	T	V	D	G	D	Y	Q	T	F	K	S	K	D	G	A	Y	V	R	E	H	F	F	G	K	Y	P	E	T	A	A	L	V	A	D	W	T	D	E	Q	I	W	A	L	N	R	G	G	H	D	P	K
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	Y	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	M	D	V	L
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.																																																																						.	.	.	.	240	.
		369	370	.	.	.	.	.	.	.	.	.				380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		K	I	Y	A	A	F	K	K	A	Q	E	.	.	.	T	K	G	K	A	T	V	I	L	A	H	T	I	K	G	Y	G	M	G	D	A	A	E	G	K	N	I	A	H	Q	V	K	K	M	N	M	D	G	V	R	H	I	R	D	R
Query Conservation													.	.	.
Alig confidence													.	.	.																										.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.
Template Sequence		A	S	Y	Y	V	V	K	E	A	V	E	R	A	R	R	G	E	G	P	S	L	V	E	L	R	V	Y	R	Y	G	P	H	S	S	A	D	D	D	S	.	.	.	.	.	.	R	Y	R	P	K	E	E	V	A	F	W	R	K	K
Template Known Secondary structure																T	T														S		S	S	T	T			G	G	.	.	.	.	.	.	G	T	S										T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280							.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions