Job Description P0AFG8 Confidence 99.71% Date Thu Jan 5 11:26:11 GMT 2012 Rank 45 Aligned Residues 162 % Identity 14% Template d1qs0b1 SCOP info Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Branched-chain alpha-keto acid dehydrogenase Pyr module Resolution 2.40

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.		.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		S	K	E	I	S	T	T	I	A	F	V	R	A	L	N	V	M	L	K	N	K	S	I	K	D	R	L	V	P	I	I	A	D	E	A	R	T	F	G	M	E	G	L	F	R	Q	I	G	I	Y	S	P	N	G	Q	Q	Y	T	P	Q	D	R	E	Q	V	A	Y	Y	K	E	D	E	.	K	G	Q	I	L	Q	E
Query Conservation																																																																										.
Alig confidence																						.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template Conservation																						.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	T	T	X	T	X	I	Q	A	L	R	S	A	X	D	V	X	L	E	R	.	.	.	D	D	N	V	V	V	Y	G	Q	D	V	G	Y	F	G	G	V	F	R	C	T	E	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	K	Y	G	K	S	R	V	F	D	A
Template Known Secondary structure																						.	.	.		T	T						T	T		S	S	S			T	T	S	T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	T
Template Predicted Secondary structure																						.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																						.	.	.	50	.	.	.	.	.	.	.	.
		569	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.		.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.								.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
Predicted Secondary structure																															.																						.	.	.	.	.	.	.
Query SS confidence																															.																						.	.	.	.	.	.	.
Query Sequence		G	I	N	E	L	G	A	G	C	S	W	L	A	A	A	T	S	Y	S	T	N	N	L	P	M	I	P	F	Y	.	I	Y	Y	S	M	F	G	F	Q	R	I	G	D	L	C	W	A	A	G	D	Q	.	.	.	.	.	.	.	Q	A	R	G	F	L	I	G	G	T	S	G	R	T	T	L	N	G	E	G	L	Q
Query Conservation																															.																						.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.							.																						.	.	.	.	.	.	.														.	.	.
Template Conservation																			.	.	.	.	.	.																																																	.	.	.
Template Sequence		P	I	S	E	S	G	I	V	G	T	A	V	G	X	G	A	Y	.	.	.	.	.	.	G	L	R	P	V	V	E	I	Q	F	A	D	Y	F	Y	P	A	S	D	Q	I	V	S	E	X	A	R	L	R	Y	R	S	A	G	E	F	I	A	P	L	T	L	R	X	P	C	G	G	.	.	.	G	I	Y	G	G	Q
Template Known Secondary structure			S																.	.	.	.	.	.	T								S		G	G	G		G	G	G						T	T	T	T	T					T	T	T	S	S													.	.	.	S	S	S			S
Template Predicted Secondary structure																			.	.	.	.	.	.																																																	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.							.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.
		641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	D	G	H	S	H	I	Q	S	L	T	I	P	N	C	I	S	Y	D	P	A	Y	A	Y	E	V	A	V	I	M	H	D	G	L	E	R	M	Y	G	E	K	Q	E	N	V	Y	Y	Y
Query Conservation
Alig confidence																																						.	.	.	.	.
Template Conservation																																						.	.	.	.	.
Template Sequence		T	H	S	Q	S	P	E	A	X	F	T	Q	V	C	G	L	R	T	V	X	P	S	N	P	Y	D	A	K	G	L	L	I	A	S	I	E	.	.	.	.	.	C	D	D	P	V	I	F	L
Template Known Secondary structure		S	S	S								T	T	S	T	T								S														.	.	.	.	.	S	S	S
Template Predicted Secondary structure																																						.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions