Job Description P0AFG8 Confidence 100.00% Date Thu Jan 5 11:26:11 GMT 2012 Rank 18 Aligned Residues 315 % Identity 26% Template d1gpua1 SCOP info Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) TK-like PP module Resolution 1.86

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		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																												.	.	.
Query SS confidence																																																												.	.	.
Query Sequence		E	L	E	R	R	I	R	S	A	I	R	W	N	A	I	M	T	V	L	R	A	S	K	K	D	L	E	L	G	G	H	M	A	S	F	Q	S	S	A	T	I	Y	D	V	C	F	N	H	F	F	R	A	R	N	E	Q	D	G	.	.	.	G	D	L	V	Y	F	Q	G	H	I	S	P	G	V	Y	A	R	A	F
Query Conservation																																																												.	.	.
Alig confidence																								.	.	.	.	.	.																															.	.	.
Template Conservation																								.	.	.	.	.	.
Template Sequence		D	I	D	K	L	A	V	S	T	I	R	I	L	A	V	D	T	V	S	K	A	N	.	.	.	.	.	.	S	G	H	P	G	A	P	L	G	M	A	P	A	A	H	V	L	W	S	Q	M	R	M	N	P	T	N	P	D	W	I	N	R	D	R	F	V	L	S	N	G	H	A	V	A	L	L	Y	S	M	L	H
Template Known Secondary structure																							T	.	.	.	.	.	.		S																		T					T	T		T	T		T	T							S	S	G	G	G
Template Predicted Secondary structure																								.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.							.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		154	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																																																									.	.	.
Query SS confidence						.																																																									.	.	.
Query Sequence		L	E	G	R	.	L	T	Q	E	Q	L	D	N	F	R	Q	E	V	H	G	N	G	L	S	S	Y	P	H	P	K	L	M	P	E	F	W	Q	F	P	T	V	S	M	G	L	G	P	I	G	A	I	Y	Q	A	K	F	L	K	Y	L	E	.	.	.	H	R	G	L	K	D	T	S	K	Q	T	V	Y	A	F	L
Query Conservation						.																																																									.	.	.
Alig confidence						.													.	.												.				.																											.	.	.
Template Conservation																			.	.												.				.
Template Sequence		L	T	G	Y	D	L	S	I	E	D	L	K	Q	F	R	Q	L	.	.	G	S	R	T	P	G	H	P	E	F	E	.	L	P	G	.	V	E	V	T	T	G	P	L	G	Q	G	I	S	N	A	V	G	M	A	M	A	Q	A	N	L	A	A	T	Y	N	K	P	G	F	T	L	S	D	N	Y	T	Y	V	F	L
Template Known Secondary structure			T	T		S							T	T	T	T		T	.	.	T		S			S	S			T	T	.	S	T	T	.			S				S	T	T																						B	T	T	B
Template Predicted Secondary structure																			.	.												.				.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.		.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	G	E	M	D	E	P	E	S	K	G	A	I	T	I	A	T	R	E	K	L	D	N	L	V	F	V	I	N	C	N	L	Q	R	L	D	G	P	V	T	G	N	G	K	I	I	N	E	L	E	G	I	F	E	G	A	G	W	N	V	I	K	V	M	W	G	S	R	W	D	E	L	L	R	K	D	T	S	G
Query Conservation
Alig confidence																																															.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	D	G	C	L	Q	E	G	I	S	S	E	A	S	S	L	A	G	H	L	K	L	G	N	L	I	A	I	Y	D	D	N	K	I	T	I	D	G	A	T	S	I	S	F	D	.	.	E	D	V	A	K	R	Y	E	A	Y	G	W	E	V	L	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S													T	T		T	T									S			T	T			G	G	G	T			.	.											T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.			.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		K	L	I	Q	L	M	N	E	T	V	D	G	D	Y	Q	T	F	K	S	K	D	G	A	Y	V	R	E	H	F	F	G	K	Y	P	E	T	A	A	L	V	A	D	W	T	D	E	Q	I	W	A	L	N	R	G	.	.	G	H	D	P	K	K	I	Y	A	A	F	K	K	A	Q	E	T	K	G	K	A	T	V	I
Query Conservation																																																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	G	N	E	D	L	A	G	I	A	K	A	I	A	Q	A	K	L	S	K	D	K	P	T	L	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		T	T	T																T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																							218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.		.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.						.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																																										.																		.	.	.	.	.
Query SS confidence																																										.																		.	.	.	.	.
Query Sequence		L	A	H	T	I	K	G	Y	G	M	G	D	A	A	E	G	K	N	I	A	H	Q	V	K	K	M	N	M	D	G	V	R	H	I	R	D	R	F	N	V	.	P	V	S	D	A	D	I	E	K	L	P	Y	I	T	F	P	E	.	.	.	.	.	G	S	E	E	H	T	Y	L	H	A	Q	R	Q	K	L	H	G
Query Conservation																																										.																		.	.	.	.	.
Alig confidence																.	.	.																								.																		.	.	.	.	.
Template Conservation																.	.	.
Template Sequence		K	M	T	T	T	I	G	Y	G	S	L	H	A	G	.	.	.	S	H	S	V	H	G	A	P	L	K	A	D	D	V	K	Q	L	K	S	K	F	G	F	N	P	D	K	S	F	V	V	P	Q	E	V	Y	D	H	Y	Q	K	T	I	L	K	P	G	V	E	A	N	N	K	W	N	K	L	F	S	E	Y	Q	K
Template Known Secondary structure							T	T	T	T	S	T	T	T	T	.	.	.	S	G	G	G	S	S	S														T	T			T	T			S														T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		462	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	P	S	R	Q	P	N	F	T	E	K	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	F	P	E	L	G	A	E	L	A	R	R	L	S
Template Known Secondary structure															T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions