 |
Job Description | P0AFG8 | Confidence | 37.88% | Date | Thu Jan 5 11:26:11 GMT 2012 |
Rank | 144 | Aligned Residues | 120 |
% Identity | 13% | Template | c3opyB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; |
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
|
Resolution | 3.05 Å |
|
 |
  |   |
263 | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | |
. | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | R | L | D | G | P | V | T | G | N | G | K | I | I | N | E | L | E | G | I | F | E | G | A | G | W | N | V | I | K | V | M | W | G | S | R | W | D | E | L | L | R | K | D | T | S | G | K | L | I | Q | . |
L | M | N | E | T | V | D | G | D | Y | Q | T | F | K | S | K | D | G | A | Y | V | R | E | H | F | F | G | K |
Query Conservation |   |
  |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |
|
|   |
|
|   |
|   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |
|
|   |   | . |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |
|   |
|
|   |   |
|   |   | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|   |   |
|
Template Sequence |   |
I | N | V | G | A | P | A | G | G | M | N | S | A | V | Y | S | M | A | T | Y | C | M | S | R | G | H | V | P | Y | A | I | H | N | G | F | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | L | A | R | H | E | S | V | R | S | I | N | W | L | D | I | E | G | W | G | S | L | G | G | S | E | I | G | T | N | R | T | L | P |
Template Known Secondary structure |   |
 |  |  | S | S |
|
| T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  | T | T |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
|  |  |  |
|
| T | T | T | T | T | T | G | G | G |
|
| S |
| S | S |
|  |  |
|
|
| T |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
577 | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . |
  |
  |   |
342 | . | . | |
. | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | |
. | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | |
|
|
. | . | . | . | . | . | . | . | 390 | . | . |
Predicted Secondary structure |   |
|
|
| . |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . |
|
|
|  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | P | E | . |
T | A | A | L | V | A | D | W | T | D | E | Q | I | W | A | L | . |
N | R | G | G | H | D | P | K | K | I | Y | A | A | F | K | K | A | Q | E | T | K | . |
. |
. |
G | K | A | T | V | I | L | A | H | T | I |
Query Conservation |   |
  |
|   | . |   |   |   |
|
|   |   |   |   |
|   |   |
|   |   |   | . |   |   |
|
|
|
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   | . | . | . |   |   |
|
|   |
|   |
|   |
|   |
Alig confidence |   |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|
|   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|
Template Sequence |   |
N | D | A | D | I | G | M | I | A | Y | F | F | E | K | Y | G | F | D | G | L | I | L | V | G | G | F | E | A | F | I | S | L | H | Q | L | E | R | A | R | I | N | Y | P | S | L | R | I | P | L | V | L | I | P | A | T | I |
Template Known Secondary structure |   |
T | T | S |
|  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G | T |
| G | G | G |
| S |
|  |  |  |  |  | B |
| S |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
647 | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|