Job Description P0AFG8 Confidence 100.00% Date Thu Jan 5 11:26:11 GMT 2012 Rank 24 Aligned Residues 308 % Identity 12% Template c3dufD_ PDB info PDB header:oxidoreductase/transferase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component subunit beta; PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex Resolution 2.50 Å

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		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.		.	.	.	.	.	.	.	.	570
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		E	I	S	T	T	I	A	F	V	R	A	L	N	V	M	L	K	N	K	S	I	K	D	R	L	V	P	I	I	A	D	E	A	R	T	F	G	M	E	G	L	F	R	Q	I	G	I	Y	S	P	N	G	Q	Q	Y	T	P	Q	D	R	E	Q	V	A	Y	Y	K	E	D	E	.	K	G	Q	I	L	Q	E	G	I
Query Conservation																																																																								.
Alig confidence																				.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template Conservation																				.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	M	T	M	V	Q	A	I	T	D	A	L	R	I	E	L	K	N	.	.	.	D	P	N	V	L	I	F	G	E	D	V	G	V	N	G	G	V	F	R	A	T	E	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	E	F	G	E	D	R	V	F	D	T	P	L
Template Known Secondary structure																				.	.	.		T	T						T	T		S	T	T			T	T	S	T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	T						S
Template Predicted Secondary structure																				.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																						.	.	.	.	.	.	50	.	.	.	.	.	.	.
		571	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.								.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.
Predicted Secondary structure																															.																				.	.	.	.	.	.	.
Query SS confidence																															.																				.	.	.	.	.	.	.
Query Sequence		N	E	L	G	A	G	C	S	W	L	A	A	A	T	S	Y	S	T	N	N	L	P	M	I	P	F	Y	I	Y	.	Y	S	M	F	G	F	Q	R	I	G	D	L	C	W	A	A	G	D	Q	.	.	.	.	.	.	.	Q	A	R	G	F	L	I	G	G	T	S	G	R	T	T	L	N	G	E	G	L	Q	H	E
Query Conservation																															.																				.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.										.																				.	.	.	.	.	.	.														.	.	.
Template Conservation																.	.	.	.	.	.																																																		.	.	.
Template Sequence		A	E	S	G	I	G	G	L	A	I	G	L	A	L	.	.	.	.	.	.	Q	G	F	R	P	V	P	E	I	Q	F	F	G	F	V	Y	E	V	M	D	S	I	C	G	Q	M	A	R	I	R	Y	R	T	G	G	R	Y	H	M	P	I	T	I	R	S	P	F	G	G	.	.	.	G	V	H	T	P	E	L	H
Template Known Secondary structure																.	.	.	.	.	.	T	T								S	S	G	G	G	G	G	G	G							T	T	T	T					T	T	T	S	S													.	.	.	S	S				T	T	S
Template Predicted Secondary structure																.	.	.	.	.	.																																																		.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.							.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.
		643	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	H	S	H	I	Q	S	L	T	I	P	N	C	I	S	Y	D	P	A	Y	A	Y	E	V	A	V	I	M	H	D	G	L	E	R	M	Y	G	E	K	Q	E	N	V	Y	Y	Y	I	T	T	L	N	E	N	Y	H	M	P	A	M	P	E	G	A	E	E	G	I	R	K	G	I	Y	K	L	E	T	I	E	G
Query Conservation
Alig confidence																																				.	.	.	.	.																																								.	.
Template Conservation																																				.	.	.	.	.																																								.	.
Template Sequence		S	D	S	L	E	G	L	V	A	Q	Q	P	G	L	K	V	V	I	P	S	T	P	Y	D	A	K	G	L	L	I	S	A	I	R	.	.	.	.	.	D	N	D	P	V	I	F	L	E	H	L	K	L	Y	R	S	F	R	Q	E	V	P	E	G	E	Y	T	I	P	I	G	K	A	D	I	K	R	E	G	.	.
Template Known Secondary structure		S								T	T	S	T	T								S														.	.	.	.	.	S	S	S								T	T	T	T	T	S							S	S						T	T									.	.
Template Predicted Secondary structure																																				.	.	.	.	.																																								.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	G	K	V	Q	L	L	G	S	G	S	I	L	R	H	V	R	E	A	A	E	I	L	A	K	D	Y	G	V	G	S	D	V	Y	S	V	T	S	F	T	E	L	A	R	D	G	Q	D	C	E	R	W	N	M	L	H	P	L	E	T	P	R	V	P	Y	I	A	Q	V	M	N	D	A	P	A	V	A	S	T
Query Conservation
Alig confidence		.	.																										.																								.	.	.	.	.	.	.	.	.																				.
Template Conservation		.	.																										.																								.	.	.	.	.	.	.	.	.																				.
Template Sequence		.	.	K	D	I	T	I	I	A	Y	G	A	M	V	H	E	S	L	K	A	A	A	E	L	E	K	E	.	G	I	S	A	E	V	V	D	L	R	T	V	Q	P	L	D	I	E	T	I	I	G	S	.	.	.	.	.	.	.	.	.	V	E	K	T	G	R	A	I	V	V	Q	E	A	Q	R	Q	A	G	I	.
Template Known Secondary structure		.	.	S	S							T	T														T	T	.	T									S				S										.	.	.	.	.	.	.	.	.					S										T	T	S	S	S	.
Template Predicted Secondary structure		.	.																										.																								.	.	.	.	.	.	.	.	.																				.
Template SS confidence
				202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.										250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.				820	.	.	.	.	.	.		.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.								.
Query SS confidence																			.	.	.								.
Query Sequence		D	Y	M	K	L	F	A	E	Q	V	R	T	Y	V	P	A	D	.	.	.	D	Y	R	V	L	G	T	.	D	G	F	G	R	S	D	S	R	E	N	L	R	H	H	F	E	V	D	A	S	Y	V	V	V	A	A	L	G	E	L
Query Conservation																			.	.	.								.
Alig confidence		.	.																.	.	.								.									.	.	.
Template Conservation		.	.																																			.	.	.
Template Sequence		.	.	A	A	N	V	V	A	E	I	N	E	R	A	I	L	S	L	E	A	P	V	L	R	V	A	A	P	D	T	V	Y	P	F	A	Q	.	.	.	A	E	S	V	W	L	P	N	F	K	D	V	I	E	T	A	K	K	V	M
Template Known Secondary structure		.	.													G	G	G		S	S									S	S	S				G	G	.	.	.	G					S
Template Predicted Secondary structure		.	.																																			.	.	.
Template SS confidence
				269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.				.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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