Phyre 2 alignment of P0AFG8 with c2bp7F

Job Description P0AFG8
Confidence 100.00% Date Thu Jan 5 11:26:11 GMT 2012

Rank 30 Aligned Residues 310

% Identity 14% Template c2bp7F_

PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1)

Resolution 2.9 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.		.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence	S	K	E	I	S	T	T	I	A	F	V	R	A	L	N	V	M	L	K	N	K	S	I	K	D	R	L	V	P	I	I	A	D	E	A	R	T	F	G	M	E	G	L	F	R	Q	I	G	I	Y	S	P	N	G	Q	Q	Y	T	P	Q	D	R	E	Q	V	A	Y	Y	K	E	D	E	.	K	G	Q	I	L	Q	E
Query Conservation																																																																									.
Alig confidence																					.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template Conservation																					.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	T	T	T	M	T	M	I	Q	A	L	R	S	A	M	D	V	M	L	E	R	.	.	.	D	D	N	V	V	V	Y	G	Q	D	V	G	Y	F	G	G	V	F	R	C	T	E	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	K	Y	G	K	S	R	V	F	D	A
Template Known Secondary structure																					.	.	.		T	T						T	T		S	S	S			T	T	S	T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	T
Template Predicted Secondary structure																					.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																						.	.	.	50	.	.	.	.	.	.	.	.

	569	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.								.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
Predicted Secondary structure																																.																			.	.	.	.	.	.	.
Query SS confidence																																.																			.	.	.	.	.	.	.
Query Sequence	G	I	N	E	L	G	A	G	C	S	W	L	A	A	A	T	S	Y	S	T	N	N	L	P	M	I	P	F	Y	I	Y	.	Y	S	M	F	G	F	Q	R	I	G	D	L	C	W	A	A	G	D	.	.	.	.	.	.	.	Q	Q	A	R	G	F	L	I	G	G	T	S	G	R	T	T	L	N	G	E	G	L	Q
Query Conservation																																.																			.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.									.																			.	.	.	.	.	.	.															.	.	.
Template Conservation																		.	.	.	.	.	.																																																	.	.	.
Template Sequence	P	I	S	E	S	G	I	V	G	T	A	V	G	M	G	A	Y	.	.	.	.	.	.	G	L	R	P	V	V	E	I	Q	F	A	D	Y	F	Y	P	A	S	D	Q	I	V	S	E	M	A	R	L	R	Y	R	S	A	G	E	F	I	A	P	L	T	L	R	M	P	C	G	G	.	.	.	G	I	Y	G	G	Q
Template Known Secondary structure		S																.	.	.	.	.	.	T								S		G	G	G		G	G	G						T	T	T	T	T					T	T	T	S	S													.	.	.	S	S	S			T
Template Predicted Secondary structure																		.	.	.	.	.	.																																																	.	.	.
Template SS confidence
	59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.							.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.

	641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
Predicted Secondary structure
Query SS confidence
Query Sequence	H	E	D	G	H	S	H	I	Q	S	L	T	I	P	N	C	I	S	Y	D	P	A	Y	A	Y	E	V	A	V	I	M	H	D	G	L	E	R	M	Y	G	E	K	Q	E	N	V	Y	Y	Y	I	T	T	L	N	E	N	Y	H	M	P	A	M	P	E	G	A	E	E	G	I	R	K	G	I	Y	K	L	E	T	I
Query Conservation
Alig confidence																																					.	.	.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence	T	H	S	Q	S	P	E	A	M	F	T	Q	V	C	G	L	R	T	V	M	P	S	N	P	Y	D	A	K	G	L	L	I	A	S	I	E	.	.	.	.	.	C	D	D	P	V	I	F	L	E	P	K	R	L	Y	N	G	P	F	D	G	H	H	D	R	P	V	T	P	W	S	K	H	P	H	S	A	V	P	D
Template Known Secondary structure	T	S	S				T					T	S	T	T								S														.	.	.	.	.		S	S								G	G	G	S	S	S				S		S	S	S					G	G	G	S	T	T					S
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

	721													.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	.	.	.	.	.	.	.	.	.	.	.	.	G	S	K	G	K	V	Q	L	L	G	S	G	S	I	L	R	H	V	R	E	A	A	E	I	L	A	K	D	Y	G	V	G	S	D	V	Y	S	V	T	S	F	T	E	L	A	R	D	G	Q	D	C	E	R	W	N	M	L	H	P	L	E	T	P	R	V	P	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.			.																					.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.			.																					.	.	.	.	.	.	.	.	.
Template Sequence	G	Y	Y	T	V	P	L	D	K	A	A	I	T	R	P	G	N	D	V	S	V	L	T	Y	G	T	T	V	Y	V	A	Q	V	A	A	E	.	.	.	E	S	.	G	V	D	A	E	V	I	D	L	R	S	L	W	P	L	D	L	D	T	I	.	.	.	.	.	.	.	.	.	V	E	S	V	K	K	T	G	R
Template Known Secondary structure	S						T	T									S	S							T	T											.	.	.			.										S				S							.	.	.	.	.	.	.	.	.								S
Template Predicted Secondary structure																																					.	.	.			.																					.	.	.	.	.	.	.	.	.
Template SS confidence
	205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240				.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.										.	.	.	.	.	.	.	270	.

	789	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.				.	820	.	.	.	.	.	.		.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.									.
Query SS confidence																															.	.	.									.
Query Sequence	I	A	Q	V	M	N	D	A	P	A	V	A	S	T	D	Y	M	K	L	F	A	E	Q	V	R	T	Y	V	P	A	.	.	.	D	D	Y	R	V	L	G	T	.	D	G	F	G	R	S	D	S	R	E	N	L	R	H	H	F	E	V	D	A	S	Y	V	V	V	A	A	L	G	E	L
Query Conservation																															.	.	.									.
Alig confidence											.	.	.																		.	.	.									.								.	.	.	.
Template Conservation											.	.	.																																					.	.	.	.
Template Sequence	C	V	V	V	H	E	A	T	R	T	.	.	.	C	G	F	G	A	E	L	V	S	L	V	Q	E	H	C	F	H	H	L	E	A	P	I	E	R	V	T	G	W	D	T	P	Y	P	H	A	.	.	.	.	Q	E	W	A	Y	F	P	G	P	S	R	V	G	A	A	L	K	K	V	M
Template Known Secondary structure									S	T	.	.	.	T	S													S	T	T	T			S									S	S				S	T	.	.	.	.	T					S														T
Template Predicted Secondary structure											.	.	.																																					.	.	.	.
Template SS confidence
	272	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.					.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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