 |
Job Description | P0AFG8 | Confidence | 40.91% | Date | Thu Jan 5 11:26:11 GMT 2012 |
Rank | 140 | Aligned Residues | 116 |
% Identity | 15% | Template | c1zxxA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:6-phosphofructokinase; |
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii
|
Resolution | 1.85 Å |
|
 |
  |   |
263 | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | |
|
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
| . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
Query Sequence |   |
Q | R | L | D | G | P | V | T | G | N | G | K | I | I | N | E | L | E | G | I | F | E | G | A | G | W | N | V | I | K | V | M | W | G | S | R | W | D | E | L | L | R | K | D | T | S | G | K | L | I | Q | L | M | N | E | T | V | D | G | D | Y | Q | T | F | K | S | K | D | G | A | Y | V | R | E | H | F | F | G | . |
. |
Query Conservation |   |
  |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |
|
|   |
|
|   |
|   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
Template Conservation |   |
|   |
|
|
|   |
|
|
|   |
|
|   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |
|   |   |   |
|   |   | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|   |   |   |   |
Template Sequence |   |
L | T | S | G | G | D | A | P | G | M | N | A | A | V | R | A | V | T | R | V | A | I | A | N | G | L | E | V | F | G | I | R | Y | G | F | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | L | V | A | G | D | I | F | P | L | E | S | E | D | V | A | H | L | I | N | V | S | G | T | F | L | Y | S | A | R | Y | P | E | F |
Template Known Secondary structure |   |
 |  |
| S | S |
|
| T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |
| T |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  | T |
|  |  |  |
|
| G | G | G | G | T | T |
| T | T |
|
| S |
| T | T |
|
|
|
|
| G | G | G |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . |
  |
  |   |
|
341 | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | |
. | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . |
Predicted Secondary structure |   |
. |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
K | Y | P | E | T | A | A | L | V | A | D | W | T | D | E | Q | I | W | A | L | . |
N | R | G | G | H | D | P | K | K | I | Y | A | A | F | K | K | A | Q | E | T | K | G | K | A | T | V | I | L | A | H | T | I |
Query Conservation |   |
. |   |   |
|   |   |   |   |
|
|   |   |   |   |
|   |   |
|   |   |   | . |   |   |
|
|
|
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |
|   |
|   |
|   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |
|
|
|
|
|
|   |
|
|   |   |   |
|   |   |
|   |   |   | . | . | . | . |   |
|   |
|
|
|
|
|
|
|
|
Template Sequence |   |
A | E | E | E | G | Q | L | A | G | I | E | Q | L | K | K | H | G | I | D | A | V | V | V | I | G | G | D | G | S | Y | H | G | A | L | Q | L | T | R | H | . |
. |
. |
. |
G | F | N | S | I | G | L | P | G | T | I |
Template Known Secondary structure |   |
T | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  | T | . | . | . | . | T |
|
|  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | |
|
|
|
. | . | . | . | 120 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|