Job Description P0AFG8 Confidence 100.00% Date Thu Jan 5 11:26:11 GMT 2012 Rank 22 Aligned Residues 309 % Identity 13% Template c1um9D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:2-oxo acid dehydrogenase beta subunit; PDBTitle: branched-chain 2-oxo acid dehydrogenase (e1) from thermus2 thermophilus hb8 in apo-form Resolution 2.20 Å

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		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	T	T	I	A	F	V	R	A	L	N	V	M	L	K	N	K	S	I	K	D	R	L	V	P	I	I	A	D	E	A	R	T	F	G	M	E	G	L	F	R	Q	I	G	I	Y	S	P	N	G	Q	Q	Y	T	P	Q	D	R	E	Q	V	A	Y	Y	K	E	D	E	K	G	Q	I	L	Q	E	G	I	N	E
Query Conservation
Alig confidence																			.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	T	M	V	Q	A	L	N	R	A	L	D	E	E	M	A	K	.	.	.	D	P	R	V	V	V	L	G	E	D	V	G	K	R	G	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	V	T	E	G	L	L	Q	K	Y	G	P	D	R	V	M	D	T	P	L	S	E
Template Known Secondary structure																			.	.	.		T	T						T	T		S	S	S			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	T	T	T	T							T	T	T						S
Template Predicted Secondary structure																			.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20				.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.		.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.						620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
Predicted Secondary structure																											.																							.	.	.	.	.
Query SS confidence																											.																							.	.	.	.	.
Query Sequence		L	G	A	G	C	S	W	L	A	A	A	T	S	Y	S	T	N	N	L	P	M	I	P	F	Y	.	I	Y	Y	S	M	F	G	F	Q	R	I	G	D	L	C	W	A	A	G	D	Q	Q	.	.	.	.	.	A	R	G	F	L	I	G	G	T	S	G	R	T	T	L	N	G	E	G	L	Q	H	E	D	G	H	S
Query Conservation																											.																							.	.	.	.	.
Alig confidence															.	.	.	.	.	.							.																							.	.	.	.	.								.
Template Conservation															.	.	.	.	.	.																																										.
Template Sequence		A	A	I	V	G	A	A	L	G	M	A	A	H	.	.	.	.	.	.	G	L	R	P	V	A	E	I	Q	F	A	D	Y	I	F	P	G	F	D	Q	L	V	S	Q	V	A	K	L	R	Y	R	S	G	G	Q	F	T	A	P	L	V	.	V	R	M	P	S	G	G	G	V	R	G	G	H	H	H	S	Q	S	P
Template Known Secondary structure															.	.	.	.	.	.	T								S		G	G	G	G	G	G	G							T	T	T	T					T	T	T	S	S						.								S	S				S	S	S	S
Template Predicted Secondary structure															.	.	.	.	.	.																																										.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.							.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		647	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	Q	S	L	T	I	P	N	C	I	S	Y	D	P	A	Y	A	Y	E	V	A	V	I	M	H	D	G	L	E	R	M	Y	G	E	K	Q	E	N	V	Y	Y	Y	I	T	T	L	N	E	N	Y	H	M	P	A	M	P	E	G	A	E	E	G	I	R	K	G	I	Y	K	L	E	T	I	E	G	S	K	G	K
Query Conservation
Alig confidence																																.	.	.	.	.																																								.	.	.	.
Template Conservation																																.	.	.	.	.																																								.	.	.	.
Template Sequence		E	A	H	F	V	H	T	A	G	L	K	V	V	A	V	S	T	P	Y	D	A	K	G	L	L	K	A	A	I	R	.	.	.	.	.	D	E	D	P	V	V	F	L	E	P	K	R	L	Y	R	S	V	K	E	E	V	P	E	E	D	Y	T	L	P	I	G	K	A	A	L	R	R	E	G	.	.	.	.	K	D
Template Known Secondary structure							T	S	T	T								S														.	.	.	.	.		S	S								G	G	G	S	S	S							S	S						T	T									.	.	.	.	S	S
Template Predicted Secondary structure																																.	.	.	.	.																																								.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.						.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.
		727	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	L	L	G	S	G	S	I	L	R	H	V	R	E	A	A	E	I	L	A	K	D	Y	G	V	G	S	D	V	Y	S	V	T	S	F	T	E	L	A	R	D	G	Q	D	C	E	R	W	N	M	L	H	P	L	E	T	P	R	V	P	Y	I	A	Q	V	M	N	D	A	P	A	V	A	S	T	D	Y	M	K
Query Conservation
Alig confidence																									.																								.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																									.																								.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence		L	T	L	I	C	Y	G	T	V	M	P	E	V	L	Q	A	A	A	E	L	A	K	A	.	G	V	S	A	E	V	L	D	L	R	T	L	M	P	W	D	Y	E	A	V	M	N	S	.	.	.	.	.	.	.	.	.	V	A	K	T	G	R	V	V	L	V	S	D	A	P	R	H	.	.	.	A	S	F	V	S
Template Known Secondary structure								G	G	G														T	.	T													T										.	.	.	.	.	.	.	.	.					S										S	T	.	.	.	T
Template Predicted Secondary structure																									.																								.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250										.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.				.	.	.	270	.
		807	.	.	810	.	.	.	.	.	.				.	.	.	820	.	.	.	.	.	.		.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.											.
Query SS confidence												.	.	.											.
Query Sequence		L	F	A	E	Q	V	R	T	Y	V	.	.	.	P	A	D	D	Y	R	V	L	G	T	.	D	G	F	G	R	S	D	S	R	E	N	L	R	H	H	F	E	V	D	A	S	Y	V	V	V	A	A	L	G	E	L
Query Conservation												.	.	.											.
Alig confidence												.	.	.											.								.	.	.	.
Template Conservation																																	.	.	.	.
Template Sequence		E	V	A	A	T	I	A	E	D	L	L	D	M	L	L	A	P	P	I	R	V	T	G	F	D	T	P	Y	P	Y	A	.	.	.	.	Q	D	K	L	Y	L	P	T	V	T	R	I	L	N	A	A	K	R	A	L
Template Known Secondary structure												G	G	G		S	S									S	S				S	T	.	.	.	.	T					S
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.					.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions