Job Description P0AFG8 Confidence 100.00% Date Thu Jan 5 11:26:11 GMT 2012 Rank 27 Aligned Residues 317 % Identity 13% Template c1olsB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: roles of his291-alpha and his146-beta' in the reductive2 acylation reaction catalyzed by human branched-chain3 alpha-ketoacid dehydrogenase Resolution 1.85 Å

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		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.				.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		A	L	L	E	E	Q	S	K	E	I	S	T	T	I	A	F	V	R	A	L	N	V	M	L	K	N	K	S	I	K	D	R	L	V	P	I	I	A	D	E	A	R	T	.	.	.	F	G	M	E	G	L	F	R	Q	I	G	I	Y	S	P	N	G	Q	Q	Y	T	P	Q	D	R	E	Q	V	A	Y	Y	K	E	D
Query Conservation																																													.	.	.
Alig confidence																									.	.	.																		.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	P	E	Y	G	Q	T	Q	K	M	N	L	F	Q	S	V	T	S	A	L	D	N	S	.	.	.	L	A	K	D	P	T	A	V	I	F	G	E	D	V	A	F	G	G	V	F	R	C	T	V	G	L	R	D	K	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S																			.	.	.					T	T						T	T	T	T	T	T		T	T	S	T	T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.		.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.						.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.
Predicted Secondary structure																																							.																						.	.	.	.	.
Query SS confidence																																							.																						.	.	.	.	.
Query Sequence		E	K	G	Q	I	L	Q	E	G	I	N	E	L	G	A	G	C	S	W	L	A	A	A	T	S	Y	S	T	N	N	L	P	M	I	P	F	Y	.	I	Y	Y	S	M	F	G	F	Q	R	I	G	D	L	C	W	A	A	G	D	Q	.	.	.	.	.	Q	A	R	G	F	L	I	G	G	T	S	G	R	T	T	L
Query Conservation																																							.																						.	.	.	.	.
Alig confidence		.																									.	.	.	.	.	.							.																						.	.	.	.	.
Template Conservation		.																									.	.	.	.	.	.
Template Sequence		.	K	D	R	V	F	N	T	P	L	C	E	Q	G	I	V	G	F	G	I	G	I	A	V	T	.	.	.	.	.	.	G	A	T	A	I	A	E	I	Q	F	A	D	Y	I	F	P	A	F	D	Q	I	V	N	E	A	A	K	Y	R	Y	R	S	G	D	L	F	N	C	G	S	L	T	I	R	S	P	W	G	C
Template Known Secondary structure		.	T	T	T						S															T	.	.	.	.	.	.	T								S	S	G	G	G		G	G	G						T	T	G	G	G						T	T	S	S			T	T								S
Template Predicted Secondary structure		.																									.	.	.	.	.	.
Template SS confidence
			66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.							90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		635	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	E	G	L	Q	H	E	D	G	H	S	H	I	Q	S	L	T	I	P	N	C	I	S	Y	D	P	A	Y	A	Y	E	V	A	V	I	M	H	D	G	L	E	R	M	Y	G	E	K	Q	E	N	V	Y	Y	Y	I	T	T	L	N	E	N	Y	H	M	P	A	M	P	E	G	A	E	E	G	I	R	K	G	I
Query Conservation
Alig confidence																																												.	.	.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		V	G	H	G	A	L	Y	H	S	Q	S	P	E	A	F	F	A	H	C	P	G	I	K	V	V	I	P	R	S	P	F	Q	A	K	G	L	L	L	S	C	I	E	.	.	.	.	.	D	K	N	P	C	I	F	F	E	P	K	I	L	Y	R	A	A	A	E	E	V	P	I	E	P	Y	N	I	P	L	S	Q	A
Template Known Secondary structure			S	S		G	G	G	S	S									T		T	T							S	S														.	.	.	.	.	S	S	S								G	G	G	S	S	S							S	S						T	T
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		715	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	L	E	T	I	E	G	S	K	G	K	V	Q	L	L	G	S	G	S	I	L	R	H	V	R	E	A	A	E	I	L	A	K	D	Y	G	V	G	S	D	V	Y	S	V	T	S	F	T	E	L	A	R	D	G	Q	D	C	E	R	W	N	M	L	H	P	L	E	T	P	R	V	P	Y	I	A	Q	V	M	N
Query Conservation
Alig confidence								.	.	.	.																																																		.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.																																																		.	.	.	.	.	.	.	.	.
Template Sequence		E	V	I	Q	E	G	.	.	.	.	S	D	V	T	L	V	A	W	G	T	Q	V	H	V	I	R	E	V	A	S	M	A	K	E	K	L	G	V	S	C	E	V	I	D	L	R	T	I	I	P	W	D	V	D	T	I	C	K	S	.	.	.	.	.	.	.	.	.	V	I	K	T	G	R	L	L	I	S	H	E
Template Known Secondary structure								.	.	.	.	S	S							T	T																														S										.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.																																																		.	.	.	.	.	.	.	.	.
Template SS confidence
		214	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.										.	270	.	.	.	.	.	.	.	.	.	280
		795	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.				.	820	.	.	.	.	.	.		.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.									.
Query SS confidence																										.	.	.									.
Query Sequence		D	A	P	A	V	A	S	T	D	Y	M	K	L	F	A	E	Q	V	R	T	Y	V	P	A	.	.	.	D	D	Y	R	V	L	G	T	.	D	G	F	G	R	S	D	S	R	E	N	L	R	H	H	F	E	V	D	A	S	Y	V	V	V	A	A	L	G	E	L	A
Query Conservation																										.	.	.									.
Alig confidence						.	.	.																		.	.	.									.				.	.	.	.
Template Conservation						.	.	.																																	.	.	.	.
Template Sequence		A	P	L	T	.	.	.	G	G	F	A	S	E	I	S	S	T	V	Q	E	E	C	F	L	N	L	E	A	P	I	S	R	V	C	G	Y	D	T	P	.	.	.	.	F	P	H	I	F	E	P	F	Y	I	P	D	K	W	K	C	Y	D	A	L	R	K	M	I	N
Template Known Secondary structure				S	T	.	.	.	T															T	T	T			S									S	S		.	.	.	.			S	T	T					S															T
Template Predicted Secondary structure						.	.	.																																	.	.	.	.
Template SS confidence
		281	.	.	.				.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.					.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions