Job Description P0AFG8 Confidence 100.00% Date Thu Jan 5 11:26:11 GMT 2012 Rank 29 Aligned Residues 312 % Identity 13% Template c1ni4D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component: beta PDBTitle: human pyruvate dehydrogenase Resolution 1.95 Å

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		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.		.	.	.	.	.	.	.	.	570
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		E	I	S	T	T	I	A	F	V	R	A	L	N	V	M	L	K	N	K	S	I	K	D	R	L	V	P	I	I	A	D	E	A	R	T	F	G	M	E	G	L	F	R	Q	I	G	I	Y	S	P	N	G	Q	Q	Y	T	P	Q	D	R	E	Q	V	A	Y	Y	K	E	D	E	.	K	G	Q	I	L	Q	E	G	I
Query Conservation																																																																								.
Alig confidence																				.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template Conservation																				.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	V	T	V	R	D	A	I	N	Q	G	X	D	E	E	L	E	R	.	.	.	D	E	K	V	F	L	L	G	E	E	V	A	Q	Y	D	G	A	Y	K	V	S	R	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	K	K	Y	G	D	K	R	I	I	D	T	P	I
Template Known Secondary structure																				.	.	.		T	T						T	T		S	T	T			T	T	S	T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	T						S
Template Predicted Secondary structure																				.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																						.	.	.	.	.	.	50	.	.	.	.	.	.	.
		571	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.					620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure																															.																					.	.	.	.
Query SS confidence																															.																					.	.	.	.
Query Sequence		N	E	L	G	A	G	C	S	W	L	A	A	A	T	S	Y	S	T	N	N	L	P	M	I	P	F	Y	I	Y	.	Y	S	M	F	G	F	Q	R	I	G	D	L	C	W	A	A	G	D	Q	Q	.	.	.	.	A	R	G	F	L	I	G	G	T	S	G	R	T	T	L	N	G	E	G	L	Q	H	E	D	G	H
Query Conservation																															.																					.	.	.	.
Alig confidence																.	.	.	.	.	.										.																					.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		S	E	X	G	F	A	G	I	A	V	G	A	A	X	.	.	.	.	.	.	A	G	L	R	P	I	C	E	F	X	T	F	N	F	S	X	Q	A	I	D	Q	V	I	N	S	A	A	K	T	Y	Y	X	S	G	G	L	Q	P	V	P	I	V	F	R	G	P	N	G	A	S	A	G	V	A	A	Q	H	S	Q	C
Template Known Secondary structure																.	.	.	.	.	.	T	T								S	S	G	G	G	G	G	G	T							T	T	T	T					T	T	S	S												S			S	S			G	G	G
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.							.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.				.	.	.	.	.	.	.	720	.	.
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence		S	H	I	Q	S	L	T	I	P	N	C	I	S	Y	D	P	A	Y	A	Y	E	V	A	V	I	M	H	D	G	L	E	R	M	Y	G	E	K	Q	E	N	V	Y	Y	Y	I	T	T	L	N	E	N	Y	H	M	P	A	M	P	E	G	A	E	E	G	I	R	K	.	.	.	G	I	Y	K	L	E	T	I	E	G
Query Conservation																																																																					.	.	.
Alig confidence																																	.	.	.	.	.																																.	.	.									.	.
Template Conservation																																	.	.	.	.	.																																											.	.
Template Sequence		F	A	A	W	Y	G	H	C	P	G	L	K	V	V	S	P	W	N	S	E	D	A	K	G	L	I	K	S	A	I	R	.	.	.	.	.	D	N	N	P	V	V	V	L	E	N	E	L	X	Y	G	V	P	F	E	F	P	P	E	A	Q	S	K	D	F	L	I	P	I	G	K	A	K	I	E	R	Q	G	.	.
Template Known Secondary structure								T	S	T	T								S														.	.	.	.	.	S	S	S								T	T	T	T	T											S	T	T					T	T									.	.
Template Predicted Secondary structure																																	.	.	.	.	.																																											.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	G	K	V	Q	L	L	G	S	G	S	I	L	R	H	V	R	E	A	A	E	I	L	A	K	D	Y	G	V	G	S	D	V	Y	S	V	T	S	F	T	E	L	A	R	D	G	Q	D	C	E	R	W	N	M	L	H	P	L	E	T	P	R	V	P	Y	I	A	Q	V	M	N	D	A	P	A	V	A	S	T
Query Conservation
Alig confidence		.	.																										.																								.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation		.	.																										.																								.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence		.	.	T	H	I	T	V	V	S	H	S	R	P	V	G	H	C	L	E	A	A	A	V	L	S	K	E	.	G	V	E	C	E	V	I	N	X	R	T	I	R	P	X	D	X	E	T	I	E	A	S	.	.	.	.	.	.	.	.	.	V	X	K	T	N	H	L	V	T	V	E	G	G	W	P	Q	.	.	.	F
Template Known Secondary structure		.	.	S	S							S	T															T	.	T													T										.	.	.	.	.	.	.	.	.					S							S	S		S	T	.	.	.	T
Template Predicted Secondary structure		.	.																										.																								.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
				205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.										.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.				.
		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.					.	.	820	.	.	.	.	.	.		.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.										.
Query SS confidence																	.	.	.	.										.
Query Sequence		D	Y	M	K	L	F	A	E	Q	V	R	T	Y	V	P	.	.	.	.	A	D	D	Y	R	V	L	G	T	.	D	G	F	G	R	S	D	S	R	E	N	L	R	H	H	F	E	V	D	A	S	Y	V	V	V	A	A	L	G	E	L
Query Conservation																	.	.	.	.										.
Alig confidence																	.	.	.	.										.										.	.
Template Conservation																																								.	.
Template Sequence		G	V	G	A	E	I	C	A	R	I	X	E	G	P	A	F	N	F	L	D	A	P	A	V	R	V	T	G	A	D	V	P	X	P	Y	A	K	I	.	.	L	E	D	N	S	I	P	Q	V	K	D	I	I	F	A	I	K	K	T	L
Template Known Secondary structure		S												S	T	T	G	G	G		S	S									S	S				S	S			.	.				T	T	S
Template Predicted Secondary structure																																								.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions