Job Description P27302 Confidence 100.00% Date Thu Jan 5 11:43:48 GMT 2012 Rank 39 Aligned Residues 291 % Identity 16% Template d1w85a_ SCOP info Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Branched-chain alpha-keto acid dehydrogenase PP module Resolution 2.0

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	N	A	I	R	A	L	S	M	D	A	V	Q	K	A	K	S	G	H	P	G	A	P	M	G	M	A	D	I	A	E	V	L	W	R	D	F	L	K	H	N	P	Q	N	P	S	W	A	D	R	D	R	F	V	L	S	N	G	H	G	S	M	L	I	Y	S	L	L	H	L	T	G	Y	D	L	P	M	E	E
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.		.							.	.						.	.	.										.
Template Conservation																																								.	.	.	.	.	.	.	.	.		.							.	.						.	.	.										.
Template Sequence		Y	T	R	I	L	D	Q	R	S	I	S	L	N	R	Q	G	R	L	G	F	Y	A	P	T	A	G	Q	E	A	S	Q	I	A	S	H	F	A	L	.	.	.	.	.	.	.	.	.	E	.	K	E	D	F	I	L	.	.	P	G	Y	R	D	.	.	.	V	P	Q	I	I	W	H	G	L	.	P	L	Y	Q	A
Template Known Secondary structure																T	T	S			S					T	T											T		.	.	.	.	.	.	.	.	.		.	T	T					.	.			S	S		.	.	.							T	T		.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.		.							.	.						.	.	.										.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.										.		.	.	.	.	.	.			100	.	.	.	.				.	.	.	.	.	110	.	.	.		.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	N	F	R	Q	L	H	S	K	T	P	G	H	P	E	V	G	Y	T	A	G	V	E	T	T	T	G	P	L	G	Q	G	I	A	N	A	V	G	M	A	I	A	E	K	T	L	A	A	Q	F	N	R	P	G	H	D	I	V	D	H	Y	T	Y	A	F	M	G	D	G	C	M	M	E	G	I	S	H	E	V
Query Conservation
Alig confidence														.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	F	S	R	G	H	F	H	G	N	Q	.	.	.	.	I	P	E	G	V	N	V	L	P	P	Q	I	I	I	G	A	Q	Y	I	Q	A	A	G	V	A	L	G	L	K	M	R	G	K	.	.	.	.	.	.	.	.	.	.	K	A	V	A	I	T	Y	T	G	D	G	G	T	S	Q	G	D	F	Y	E	G
Template Known Secondary structure							T		G	G	G	G		.	.	.	.			T	T			B						S	T	T																T	T		.	.	.	.	.	.	.	.	.	.	S									T	G	G	G	G	S
Template Predicted Secondary structure														.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.											.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.
Predicted Secondary structure																																				.																																			.	.	.
Query SS confidence																																				.																																			.	.	.
Query Sequence		C	S	L	A	G	T	L	K	L	G	K	L	I	A	F	Y	D	D	N	G	I	S	I	D	G	H	V	E	G	W	F	T	D	D	.	T	A	M	R	F	E	A	Y	G	W	H	V	I	R	D	I	D	G	H	D	A	A	S	I	K	R	A	V	E	E	A	R	A	V	.	.	.	T	D	K	P	S	L	L	M
Query Conservation																																				.																																			.	.	.
Alig confidence											.																									.														.																					.	.	.
Template Conservation											.																																							.
Template Sequence		I	N	F	A	G	A	F	K	A	.	P	A	I	F	V	V	Q	N	N	R	F	A	I	S	T	P	V	E	K	Q	T	V	A	K	T	L	A	Q	K	A	V	A	A	G	I	P	G	I	.	Q	V	D	G	M	D	P	L	A	V	Y	A	A	V	K	A	A	R	E	R	A	I	N	G	E	G	P	T	L	I	E
Template Known Secondary structure								T	T		.										S			T	T			G	G	G	T		S		S		S	G	G	G	G	G	G	T	T					.				T	T																		T	T	S
Template Predicted Secondary structure											.																																							.
Template SS confidence
		185	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	K	T	I	I	G	F	G	S	P	N	K	A	G	T	H	D	S	H	G	A	P	L	G	D	A	E	I	A	L	T	R	E	Q	L	G	W	K	Y	A	P	F	E	I	P	S	E	I	Y	A	Q	W	D	A	K	E	A	G	Q	A	K	E	S	A	W	N	E	K	F	A	A	Y	A	K	A	Y	P	Q	E	A
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.
Template Sequence		T	L	C	F	R	Y	G	P	H	T	M	S	G	D	S	K	E	L	E	N	E	W	A	K	K	D	P	L	V	R	F	R	K	F	L	.	.	.	.	.	.	.	.	E	A	K	G	L	W	S	E	E	E	E	N	N	V	I	E	Q	A	K	E	E	I	K	E	A	I	K	K	A	D	E	T	P	K	Q	K	V
Template Known Secondary structure							S	S		S		S	S												T	T											.	.	.	.	.	.	.	.			T	T																											T	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.									.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	F	T	R	R	M	K	G	E	M	P	S	D	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	L	I	S	I	M	F	E	E	L	P	F	N	L
Template Known Secondary structure							T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions