Job Description P60240 Confidence 100.00% Date Thu Jan 5 12:06:41 GMT 2012 Rank 9 Aligned Residues 485 % Identity 10% Template c3tbkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rig-i helicase domain; PDBTitle: mouse rig-i atpase domain Resolution 2.14 Å

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		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																																				.	.	.										.																	.
Query SS confidence																																																				.	.	.										.																	.
Query Sequence		Q	R	T	S	L	I	P	H	Q	L	N	I	A	H	D	V	G	R	R	H	A	P	R	V	L	L	A	D	E	V	G	L	G	K	T	I	E	A	G	M	I	L	H	Q	Q	L	L	S	G	A	.	.	.	A	E	R	V	L	I	I	V	P	.	E	T	L	Q	H	Q	W	L	V	E	M	L	R	R	F	N	.
Query Conservation																																																				.	.	.										.																	.
Alig confidence																			.	.																																.	.	.										.																	.
Template Conservation																			.	.
Template Sequence		S	P	L	K	P	R	N	Y	Q	L	E	L	A	L	P	A	K	.	.	K	G	K	N	T	I	I	C	A	P	T	G	C	G	K	T	F	V	S	L	L	I	C	E	H	H	L	K	K	F	P	C	G	Q	K	G	K	V	V	F	F	A	N	Q	I	P	V	Y	E	Q	Q	A	T	V	F	S	R	Y	F	E	R
Template Known Secondary structure																			.	.	T	T									T	T	S																T			S	S										S	S																	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	F	A	L	F	D	D	E	R	Y	A	E	A	Q	H	D	A	Y	N	P	F	D	T	E	Q	L	V	I	C	S	L	D	F	A	R	R	S	K	Q	R	L	E	H	L	C	E	A	E	W	D	L	L	V	V	D	E	A	H	H	L	V	W	S	E	D	A	P	S	R	E	Y	Q	A	I	E	Q	L	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	Y	N	I	A	S	I	S	G	A	T	S	D	S	V	S	V	Q	H	I	I	E	D	N	D	I	I	I	L	T	P	Q	I	L	V	N	N	L	N	N	G	A	I	P	S	L	S	V	F	T	L	X	I	F	D	E	C	H	N	T	S	K	N	H	P	Y	N	Q	I	X	F	R	Y	L	D	H	K	L	G
Template Known Secondary structure		T	T								T	T	T	G	G	G	S										S															T	S	S	S			G	G	G		S					T	T	G	G	G		S	T	T															T	S
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
						305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.																								.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	H	V	P	G	V	L	L	L	T	A	T	P	E	Q	L	G	M	E	S	H	F	A	R	L	R	L	L	D	P	N	R	F	H	D	F	A	Q	F	V	E	E	Q	K	N	Y	R	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	A	V	A
Query Conservation		.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	S	R	D	P	L	P	Q	V	V	G	L	T	A	S	V	G	V	G	D	A	K	T	A	E	E	A	X	Q	H	I	C	K	L	C	A	A	L	D	A	S	V	I	A	T	V	R	D	N	V	A	E	L	E	Q	V	V	Y	K	P	Q	K	I	S	R	K	V	A	S	R	T	S	N	T	F	K	C	I	I	S
Template Known Secondary structure		S			S										S					T	T			S															T	T		S							S							T	T															S
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	L	A	G	N	K	L	S	N	D	E	L	N	M	L	G	E	M	I	G	E	Q	D	I	E	P	L	L	Q	A	A	N	S	D	S	E	D	A	Q	S	A	R	Q	E	L	V	S	M	L	M	D	R	H	G	T	S	R	V	L	F	R	N	T	R	N	G	V	K	G	F	P	K	R	E	L	H	T	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	X	K	E	T	E	K	L	A	K	D	V	S	E	E	L	G	K	L	F	Q	I	Q	N	R	E	F	G	T	Q	K	Y	E	Q	W	I	V	G	V	H	K	A	C	S	V	F	Q	X	A	D	K	E	E	E	S	R	V	C	K	A	L	F	L	Y	T	S	H	L	R	K	Y	N	D	A	L	I	I	S	E
Template Known Secondary structure													T	S						G	G	G	G			S			S	S	S																T				S	S
Template Predicted Secondary structure
Template SS confidence
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	L	P	T	Q	Y	Q	T	A	I	K	V	S	G	I	M	G	A	R	K	S	A	E	D	R	A	R	D	M	L	Y	P	E	R	I	Y	Q	E	F	E	G	D	N	A	T	W	W	N	F	D	P	R	V	E	W	L	M	G	Y	L	T	S	H	R	S	Q	K	V	L	V	I	C	A	K	A	A	T	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	Q	X	T	D	A	L	N	Y	L	K	A	F	F	H	D	V	R	E	T	E	R	E	L	T	R	R	F	E	E	K	L	E	E	L	E	K	V	S	R	D	P	S	N	E	N	P	K	L	R	D	L	Y	L	V	L	Q	E	E	Y	H	L	K	P	E	T	K	T	I	L	F	V	K	T	R	A	L	V	D
Template Known Secondary structure			S																													T	T											G	G	G																				T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	E	Q	V	L	R	E	R	E	G	I	R	A	A	V	F	H	E	G	M	S	I	I	E	R	D	R	A	A	A	W	F	A	E	E	D	T	G	A	Q	V	L	L	C	S	E	I	G	S	E	G	R	N	F	Q	F	A	S	H	M	V	M	F	D	L	P	F	N	P	D	L	L	E	Q	R	I	G	R	L
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Sequence		A	L	K	K	W	I	E	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	L	S	F	L	K	P	G	I	L	T	G	D	.	.	N	N	I	L	I	A	T	S	V	A	D	E	G	I	D	I	A	E	C	N	L	V	I	L	Y	E	Y	V	G	N	V	I	K	X	I	Q	T	R	G	R	G
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	T	T										.	.		S								T	T					T	T	S		S						S			S	S							S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template SS confidence
		643	.	.	.	.	.	.	650	.															.	.	.	.	.	.	.	.	660	.	.	.	.	.			.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
		598	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	I	G	Q	A	H	D	I	Q	I	H	V	P	Y	L	E	K	T	A	Q	S	V	L	V	R	W	Y	H	E	G	L	D	A	F	E	H	T	C	P	T	G	R	T	I	Y	D	S	V	Y	N	D	L	I	N	Y	L	A	S
Query Conservation
Alig confidence								.	.	.	.
Template Conservation								.	.	.	.
Template Sequence		R	A	R	D	S	K	.	.	.	.	C	F	L	L	T	S	S	A	D	V	I	E	K	E	K	A	N	X	I	K	E	K	I	X	N	E	S	I	L	R	L	Q	T	W	D	E	X	K	F	G	K	T	V	H	R	I	Q	V	N
Template Known Secondary structure		T	T	T	S			.	.	.	.						S																												S
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
		733	.	.	.	.	.					.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.