Job Description P60240 Confidence 100.00% Date Thu Jan 5 12:06:41 GMT 2012 Rank 3 Aligned Residues 423 % Identity 19% Template c3mwyW_ PDB info PDB header:hydrolase Chain: W: PDB Molecule:chromo domain-containing protein 1; PDBTitle: crystal structure of the chromodomain-atpase portion of the yeast chd12 chromatin remodeler Resolution 3.70 Å

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		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.
Predicted Secondary structure																			.	.																																				.																						.
Query SS confidence																			.	.																																				.																						.
Query Sequence		R	T	S	L	I	P	H	Q	L	N	I	A	H	D	V	G	R	.	.	R	H	A	P	R	V	L	L	A	D	E	V	G	L	G	K	T	I	E	A	G	M	I	L	H	Q	Q	L	L	S	G	A	A	E	R	.	V	L	I	I	V	P	E	T	L	Q	H	Q	W	L	V	E	M	L	R	R	F	.	N	L	R
Query Conservation																			.	.																																				.																						.
Alig confidence																			.	.																																				.																						.
Template Conservation
Template Sequence		G	G	E	L	R	D	F	Q	L	T	G	I	N	W	M	A	F	L	W	S	K	G	D	N	G	I	L	A	D	E	M	G	L	G	K	T	V	Q	T	V	A	F	I	S	W	L	I	F	A	R	R	Q	N	G	P	H	I	I	V	V	P	L	S	T	M	P	A	W	L	D	T	F	E	K	W	A	P	D	L	N
Template Known Secondary structure		S	S				T														T	T	T									T	T	S	S	T	T															S			S								T	T	T												S	T	T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.						.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																			.	.	.	.	.
Query SS confidence																			.	.	.	.	.
Query Sequence		F	A	L	F	D	D	E	R	Y	A	E	A	Q	H	D	A	Y	.	.	.	.	.	N	P	F	D	T	E	Q	L	V	I	C	S	L	D	F	A	R	R	S	K	Q	R	L	E	H	L	C	E	A	E	W	D	L	L	V	V	D	E	A	H	H	L	V	W	S	E	D	A	P	S	R	E	Y	Q	A	I	E	Q
Query Conservation																			.	.	.	.	.
Alig confidence																			.	.	.	.	.																				.	.	.
Template Conservation																																											.	.	.
Template Sequence		C	I	C	Y	M	G	N	Q	K	S	R	D	T	I	R	E	Y	E	F	Y	T	N	P	K	T	M	K	F	N	V	L	L	T	T	Y	E	Y	I	L	K	D	.	.	.	R	A	E	L	G	S	I	K	W	Q	F	M	A	V	D	E	A	H	R	L	K	N	A	E	S	S	L	Y	E	S	L	N	S	F	K	V
Template Known Secondary structure								S	S											S		S								S						T	T					T	.	.	.						T	S								T	T	G	G	G	G			S	S	S							T	T	S
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.				.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	H	V	P	G	V	L	L	L	T	A	T	P	E	Q	L	G	M	E	S	H	F	A	R	L	R	L	L	D	P	N	R	F	H	D	F	A	Q	F	V	E	E	Q	K	N	Y	R	P	V	A	D	A	V	A	M	L	L	A	G	N	K	L	S	N	D	E	L	N	M	L	G	E	M	I	G	E	Q	D
Query Conservation
Alig confidence		.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	A	N	R	M	L	I	T	G	T	P	L	Q	N	N	I	K	E	L	A	A	L	V	N	F	L	M	P	G	R	F	N	Q	D	E	E	Q	E	E	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	D	L	H	R	R	I
Template Known Secondary structure		.	.	.	.	.								S				S	S		S												S						T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure		.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.																													.	.	.	.	.	580	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400														.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	P	L	L	Q	A	A	N	S	D	S	E	D	A	Q	S	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	E	L	V	S	M	L	M	D	R	H	G	T	S	R	V	L	F	R	N	T	R	N	G	V	K	G	F	P	K	R	E	L	H	T	I	K	L	P	L	P	T	Q	Y	Q	T	A	I
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.
Template Sequence		Q	P	F	I	L	R	R	L	K	K	D	V	E	K	S	L	P	S	K	T	E	R	I	L	R	V	E	L	S	D	V	Q	T	E	Y	Y	K	N	I	L	T	K	N	Y	S	F	S	L	L	N	I	M	N	E	.	.	.	.	.	.	.	L	K	K	A	S	N	H	P	Y	L	F	D	N	A	E	E	R	V	L
Template Known Secondary structure		G	G	G						G	G	G	G	T	T	T	S																															T								.	.	.	.	.	.	.								G	G	G	S	S	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.
Template SS confidence
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.								.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.			.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		K	V	S	G	I	M	G	A	R	K	S	A	E	D	R	A	R	D	M	L	Y	P	E	R	I	Y	Q	E	F	E	G	D	N	A	T	W	W	N	F	D	P	R	V	E	W	L	M	G	Y	L	T	S	H	.	.	R	S	Q	K	V	L	V	I	C	A	K	A	A	T	A	L	Q	L	E	Q	V	L	R	E	R
Query Conservation																																																							.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	K	F	M	T	R	E	N	V	L	R	G	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S	S	G	K	M	V	L	L	D	Q	L	L	T	R	L	K	K	D	G	H	R	V	L	I	F	S	Q	M	V	R	M	L	D	I	L	G	D	Y	L	S	I	K
Template Known Secondary structure							S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T															T	T	T	T								S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		674	.	.	.	.	.	680	.	.	.	.	.	.	.																								.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730
		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.		.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		E	G	I	R	A	A	V	F	H	E	G	M	S	I	I	E	R	D	R	A	A	A	W	F	A	E	E	D	T	G	.	A	Q	V	L	L	C	S	E	I	G	S	E	G	R	N	F	Q	F	A	S	H	M	V	M	F	D	L	P	F	N	P	D	L	L	E	Q	R	I	G	R	L	D	R	I	G	Q	A	H	D
Query Conservation																																.
Alig confidence		.																														.
Template Conservation		.
Template Sequence		.	G	I	N	F	Q	R	L	D	G	T	V	P	S	A	Q	R	R	I	S	I	D	H	F	N	S	P	D	S	N	D	F	V	F	L	L	S	T	R	A	G	G	L	G	I	N	L	M	T	A	D	T	V	V	I	F	D	S	D	W	N	P	Q	A	D	L	Q	A	M	A	R	A	H	R	I	G	Q	K	N	H
Template Known Secondary structure		.	T							S	T	T	S											T	T	S	S	T	T		S												T	T	T				T	T							S	S			S		S								T	T	T	S		S	S			S
Template Predicted Secondary structure		.
Template SS confidence
			735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.
		606	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	I	H	V	P	Y	L	E	K	T	A	Q	S	V	L	V	R	W	Y	H	E	G	L	D	A	F	E	H	T	C	P	T	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	M	V	Y	R	L	V	S	K	D	T	V	E	E	E	V	L	E	R	A	R	K	K	M	I	L	E	Y	N	E	P	N	A	G	E
Template Known Secondary structure										T	T	S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		814	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.