Job Description P60240 Confidence 98.56% Date Thu Jan 5 12:06:41 GMT 2012 Rank 132 Aligned Residues 143 % Identity 17% Template c3iuyB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx53; PDBTitle: crystal structure of ddx53 dead-box domain Resolution 2.40 Å

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		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		S	L	I	P	H	Q	L	N	I	A	H	D	V	G	R	R	H	A	P	R	V	L	L	A	D	E	V	G	L	G	K	T	I	E	A	G	M	I	L	H	Q	Q	L	L	S	G	A	A	E	R	V	L	I	I	V	P	E	T	.	L	Q	H	Q	W	L	V	E	M	L	R	R	F	N	L	R	F	A	L	F	D
Query Conservation																																																												.
Alig confidence																	.	.																													.													.
Template Conservation																	.	.																													.
Template Sequence		K	P	T	P	I	Q	S	Q	A	W	P	I	I	L	Q	.	.	G	I	D	L	I	V	V	A	Q	T	G	T	G	K	T	L	S	Y	L	M	P	G	F	I	H	L	D	S	.	N	G	P	G	M	L	V	L	T	P	T	R	E	L	A	L	H	V	E	A	E	C	S	K	Y	S	Y	K	G	L	K	S	I	C
Template Known Secondary structure		S														T	.	.	T									T	T	S															T		.				S						S	S																	T	T
Template Predicted Secondary structure																	.	.																													.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	R	Y	A	E	A	Q	H	D	A	Y	N	P	F	D	T	E	Q	L	V	I	C	S	L	D	F	A	R	R	S	K	Q	R	L	E	H	L	C	E	A	E	W	D	L	L	V	V	D	E	A	H	H	L	V	W	S	E	D	A	P	S	R	E	Y	Q	A	I	E	Q	L	A	E	H	V	P	G	V	L	L
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																												.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																												.	.
Template Sequence		I	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	I	I	I	A	T	P	G	R	L	N	D	.	L	Q	M	N	N	S	V	N	L	R	S	I	T	Y	L	V	I	D	E	A	D	K	M	L	D	M	E	.	.	F	E	P	Q	I	R	K	I	L	L	D	V	R	P	D	R	Q	T	V	M
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.		S												.				T	T		S			T	T															T	T	.	.												S		S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																												.	.
Template SS confidence
		338	.	340															.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380			.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		312	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	A	T
Template Known Secondary structure				S	S
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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