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Job DescriptionP60240
Confidence99.83%DateThu Jan 5 12:06:41 GMT 2012
Rank67Aligned Residues158
% Identity9%Templatec3hgtA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:hda1 complex subunit 3; PDBTitle: structural and functional studies of the yeast class ii hda12 hdac complex
Resolution2.20 Å

  Insertion relative to template
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  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  KVSGIMGARKSAEDRARDMLYPERI. . . . . . . YQEFEGDNATWWNFDPRVEWLMGYLTSH. . RSQKVLVICAKAATALQL
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Template Sequence  EDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLL
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Query Sequence  EQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDR
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Template Sequence  EALLLGN. KVHIKRYDGHSIDFSCTVHLFSSE. . . . . . . . . GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLL. . .
Template Known Secondary structure  TTS.S
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Query Sequence  IGQAHDIQIHVPYLEKTAQSVLV
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Template Sequence  . . . QYKAPIVRLVAINSIDHCRL
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   221........230.........240
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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