Job Description P60240 Confidence 99.91% Date Thu Jan 5 12:06:41 GMT 2012 Rank 39 Aligned Residues 179 % Identity 13% Template c2fzlA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad25, xpb; PDBTitle: structure of c-terminal domain of archaeoglobus fulgidus xpb Resolution 2.90 Å

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		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	R	E	L	H	T	I	K	L	P	L	P	T	Q	Y	Q	T	A	I	K	V	S	G	I	M	G	A	R	K	S	A	E	D	R	A	R	D	M	L	Y	P	E	R	I	Y	Q	E	F	E	G	D	N	A	T	W	W	N	F	D	P	R	V	E	W	L	M	G	Y	L	T	S	H	R	S	Q	K	V	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	V	E	Y	E	K	R	E	K	V	Y	K	Q	F	L	R	A	R	G	I	T	L	R	R	A	E	D	F	N	K	I	V	M	A	S	G	Y	D	E	R	A	Y	E	A	L	R	A	W	E	E	A	R	R	I	A	F	N	S	K	N	K	I	R	K	L	R	E	I	L	E	R	H	R	K	D	K	I	I	I
Template Known Secondary structure																				T	T			G	G	G	T	T									T																						T															T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	C	A	K	A	A	T	A	L	Q	L	E	Q	V	L	R	E	R	E	G	I	R	A	A	V	F	H	E	G	M	S	I	I	E	R	D	R	A	A	A	W	F	A	E	E	D	T	G	A	Q	V	L	L	C	S	E	I	G	S	E	G	R	N	F	Q	F	A	S	H	M	V	M	F	D	L	P	F	N	P	D
Query Conservation
Alig confidence																.	.	.	.	.	.																											.	.
Template Conservation																.	.	.	.	.	.																											.	.
Template Sequence		F	T	R	H	N	E	L	V	Y	R	I	S	K	V	.	.	.	.	.	.	F	L	I	P	A	I	T	H	R	T	S	R	E	E	R	E	E	I	L	E	G	F	R	T	G	R	.	.	F	R	A	I	V	S	S	Q	V	L	D	E	G	I	D	V	P	D	A	N	V	G	V	I	M	S	G	S	G	S	A	R
Template Known Secondary structure				S												.	.	.	.	.	.	S							S	S	S		S											T	T	S	S	.	.		S					S	S		S	S	S	S														S	S	S
Template Predicted Secondary structure																.	.	.	.	.	.																											.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.							.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.			.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		589	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.		.	.	.	.	610	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		L	L	E	Q	R	I	G	R	L	D	R	I	G	Q	A	H	D	.	I	Q	I	H	V	P	Y	L	E	K
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		E	Y	I	Q	R	L	G	R	I	L	R	P	S	K	G	K	K	E	A	V	L	Y	E	L	I	S	R	G
Template Known Secondary structure															S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions