Job Description P60240 Confidence 62.74% Date Thu Jan 5 12:06:41 GMT 2012 Rank 221 Aligned Residues 124 % Identity 17% Template c2chgB_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2 Resolution 2.1 Å

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		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	A	H	D	V	G	R	R	H	A	P	R	V	L	L	A	D	E	V	G	L	G	K	T	I	E	A	G	M	I	L	H	Q	Q	L	L	S	G	A	A	E	R	V	L	I	I	V	P	E	T	L	Q	H	Q	W	L	V	E	M	L	R	R	F	N	L	R	F	A	L	F	D	D	E	R	Y	A	E	A	Q
Query Conservation
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	K	G	Y	V	E	R	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	D	V	V	R	H	K	I	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T									S		T	T	S	S														G	G	G	T	G	G	G						T	T		T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	A	Y	N	P	F	D	T	E	Q	L	V	I	C	S	L	D	F	A	R	R	S	K	Q	R	L	E	H	L	C	E	A	E	W	D	L	L	V	V	D	E	A	H	H	L	V	W	S	E	D	A	P	S	R	E	Y	Q	A	I	E	Q	L	A	E	H	V	P	G	V	L	L	L	T	A	T	P	E	Q	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	R	T	A	P	I	G	G	A	P	F	K	I	I	F	L	D	E	A	D	A	.	.	.	.	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	Y	S	K	S	C	R	F	I	L	S	C	N	Y	V	S	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	S			S	T	T		S								T	G	G	G	.	.	.	.	S																T	T	T								S		G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template SS confidence
																									92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.					.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	E	S	H	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	E	P	I	Q	S
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions