Job Description P60240 Confidence 100.00% Date Thu Jan 5 12:06:41 GMT 2012 Rank 4 Aligned Residues 439 % Identity 16% Template c1z63A_ PDB info PDB header:hydrolase/dna complex Chain: A: PDB Molecule:helicase of the snf2/rad54 hamily; PDBTitle: sulfolobus solfataricus swi2/snf2 atpase core in complex2 with dsdna Resolution 3.00 Å

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		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		Y	S	G	L	R	G	Q	R	T	S	L	I	P	H	Q	L	N	I	A	H	D	V	G	R	.	.	R	H	A	P	R	V	L	L	A	D	E	V	G	L	G	K	T	I	E	A	G	M	I	L	H	Q	Q	L	L	S	G	A	A	E	R	V	L	I	I	V	P	E	T	L	Q	H	Q	W	L	V	E	M	L	R
Query Conservation																										.	.
Alig confidence																										.	.
Template Conservation
Template Sequence		L	L	E	P	Y	N	I	K	A	N	L	R	P	Y	Q	I	K	G	F	S	W	X	R	F	X	N	K	L	G	F	G	I	C	L	A	D	D	X	G	L	G	K	T	L	Q	T	I	A	V	F	S	D	A	K	K	E	N	E	L	T	P	S	L	V	I	C	P	L	S	V	L	K	N	W	E	E	E	L	S	K
Template Known Secondary structure							S		S	S																			T	T									T	T	S																T	T			S	S							S	T	T
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	N	L	R	F	A	L	F	D	D	E	R	Y	A	E	A	Q	H	D	A	Y	N	P	F	D	T	E	Q	L	V	I	C	S	L	D	F	A	R	R	S	K	Q	R	L	E	H	L	C	E	A	E	W	D	L	L	V	V	D	E	A	H	H	L	V	W	S	E	D	A	P	S	R	E	Y	Q	A	I	E	Q
Query Conservation
Alig confidence														.	.	.	.	.	.																								.	.	.	.
Template Conservation														.	.	.	.	.	.																								.	.	.	.
Template Sequence		F	A	P	H	L	R	F	A	V	F	H	E	.	.	.	.	.	.	D	R	S	K	I	K	L	E	D	Y	D	I	I	L	T	T	Y	A	V	L	L	R	D	.	.	.	.	T	R	L	K	E	V	E	W	K	Y	I	V	I	D	E	A	Q	N	I	K	N	P	Q	T	K	I	F	K	A	V	K	E	L	K	S
Template Known Secondary structure				T	T	S						S	S	.	.	.	.	.	.	S	T	T	S			G	G	G	S	S										T	T		.	.	.	.					T										T	G	G	G	G	S		T	T	S								T	S
Template Predicted Secondary structure														.	.	.	.	.	.																								.	.	.	.
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.							.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.					.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	H	V	P	G	V	L	L	L	T	A	T	P	E	Q	L	G	M	E	S	H	F	A	R	L	R	L	L	D	P	N	R	F	H	D	F	A	Q	F	V	E	E	Q	K	N	Y	R	P	V	A	D	A	V	A	M	L	L	A	G	N	K	L	S	N	D	E	L	N	M	L	G	E	M	I	G	E	Q	D
Query Conservation
Alig confidence		.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	K	Y	R	I	A	L	T	G	T	P	I	E	N	K	V	D	D	L	W	S	I	X	T	F	L	N	P	G	L	L	G	S	Y	S	E	F	K	S	K	F	A	T	P	I	K	K	G	D	N	X	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	L	K	A	I	I
Template Known Secondary structure		.	.	.	.	.								S	S		S	T	T													S	T	T	T	T								T	T	T						T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.																	.	.	.	.	640	.	.
		382	.	.	.	.	.	.	.	390	.	.	.																				.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	P	L	L	Q	A	A	N	S	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	A	Q	S	A	R	Q	E	L	V	S	M	L	M	D	R	H	G	T	S	R	V	L	F	R	N	T	R	N	G	V	K	G	F	P	K	R	E	L	H	T	I	K	L	P	L	P	T
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		S	P	F	I	L	R	R	T	K	Y	D	K	A	I	I	N	D	L	P	D	K	I	E	T	N	V	Y	C	N	L	T	P	E	Q	A	A	X	Y	K	A	E	V	E	N	L	F	N	N	I	D	S	V	T	G	I	K	R	K	G	X	I	L	S	T	L	L	K	L	K	Q	I	V	D	H	P	.	.	.	.	.
Template Known Secondary structure		T	T	T						T	T						T	T	S		S																										T	T	T	T	T	T			T																		T	T		T	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		643	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.			.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		Q	Y	Q	T	A	I	K	V	S	G	I	M	G	A	R	K	S	A	E	D	R	A	R	D	M	L	Y	P	E	R	I	Y	Q	E	F	E	G	D	N	A	T	W	W	N	F	D	P	R	V	E	W	L	M	G	Y	L	T	S	H	.	.	R	S	Q	K	V	L	V	I	C	A	K	A	A	T	A	L	Q	L	E
Query Conservation																																																													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	L	K	G	G	E	Q	S	V	R	R	S	G	K	X	I	R	T	X	E	I	I	E	E	A	L	D	E	G	D	K	I	A	I	F	T	Q	F	V	D	X	G	K	I	I	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S				S	T	T																T	T	T								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																			718	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	L	R	E	R	E	G	I	R	A	A	V	F	H	E	G	M	S	I	I	E	R	D	R	A	A	A	W	F	A	E	E	D	T	G	A	Q	V	L	L	C	S	E	I	G	S	E	G	R	N	F	Q	F	A	S	H	M	V	M	F	D	L	P	F	N	P	D	L	L	E	Q	R	I	G	R	L	D	R	I
Query Conservation
Alig confidence																																					.																																	.	.	.
Template Conservation																																					.																																	.	.	.
Template Sequence		N	I	I	E	K	E	L	N	T	E	V	P	F	L	Y	G	E	L	S	K	K	E	R	D	D	I	I	S	K	F	Q	N	N	P	S	.	V	K	F	I	V	L	S	V	K	A	G	F	G	I	N	L	T	S	A	N	R	V	I	H	F	D	R	W	W	N	P	D	.	.	.	Q	A	T	D	R	V	Y	R	I
Template Known Secondary structure									T								T	T	S																T	T	.																	T	T		S					S	S			S				.	.	.					T	T	T	T	T
Template Predicted Secondary structure																																					.																																	.	.	.
Template SS confidence
		765	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.		800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.				.	.	.	.	.	.	.	.	840
		601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.		.	.	650	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		G	Q	A	H	D	I	Q	I	H	V	P	Y	L	E	K	T	A	Q	S	V	L	V	R	W	Y	H	E	G	L	D	A	F	E	H	T	C	P	T	G	R	T	I	Y	D	S	V	Y	.	N	D	L	I	N	Y	L	A
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		G	Q	T	R	N	V	I	V	H	K	L	I	S	V	G	T	L	E	E	K	I	D	Q	L	L	A	F	K	R	S	L	F	K	D	I	I	S	S	G	D	S	W	I	T	E	L	S	T	E	E	L	R	K	V	I	E
Template Known Secondary structure		T	T	T	S										T	T	S					T					T	T		S	S	S	S	S	S	G	G	G	S	T	T	G	G	G	G	S	S										S
Template Predicted Secondary structure
Template SS confidence
		845	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900