Job Description P60240 Confidence 100.00% Date Thu Jan 5 12:06:41 GMT 2012 Rank 2 Aligned Residues 496 % Identity 17% Template c1z3iX_ PDB info PDB header:recombination/dna binding Chain: X: PDB Molecule:similar to rad54-like; PDBTitle: structure of the swi2/snf2 chromatin remodeling domain of eukaryotic2 rad54 Resolution 3.00 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.								.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.																																		.	.	.
Query SS confidence																																							.	.	.	.	.	.	.																																		.	.	.
Query Sequence		R	Y	R	A	R	K	Y	S	S	E	Q	F	R	M	P	Y	S	G	L	R	G	Q	R	T	S	L	I	P	H	Q	L	N	I	A	H	D	V	.	.	.	.	.	.	.	G	R	R	H	A	P	R	V	L	L	A	D	E	V	G	L	G	K	T	I	E	A	G	M	I	L	H	Q	Q	L	L	S	G	.	.	.
Query Conservation																																							.	.	.	.	.	.	.																																		.	.	.
Alig confidence																																							.	.	.	.	.	.	.																																		.	.	.
Template Conservation
Template Sequence		A	H	D	L	I	K	A	D	K	E	K	L	P	V	H	V	V	V	D	P	V	L	S	K	V	L	R	P	H	Q	R	E	G	V	K	F	L	W	D	C	V	T	G	R	R	I	E	N	S	Y	G	C	I	M	A	D	E	M	G	L	G	K	T	L	Q	C	I	T	L	I	W	T	L	L	K	Q	S	P	D	C
Template Known Secondary structure								S		G	G	G	S												T	T																	T	T	S	S	S	T	T										T	T	S																		T	T	S
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
				199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.									.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																														.	.	.	.	.	.	.	.
Query SS confidence		.	.																																														.	.	.	.	.	.	.	.
Query Sequence		.	.	A	A	E	R	V	L	I	I	V	P	E	T	L	Q	H	Q	W	L	V	E	M	L	R	R	F	N	L	R	F	A	L	F	D	D	E	R	Y	A	E	A	Q	H	D	A	Y	.	.	.	.	.	.	.	.	N	P	F	D	T	E	Q	L	V	I	C	S	L	D	F	A	R	R	S	K	Q	R	L	E	H
Query Conservation		.	.																																														.	.	.	.	.	.	.	.
Alig confidence		.	.																																														.	.	.	.	.	.	.	.																				.	.	.
Template Conservation																																																																												.	.	.
Template Sequence		K	P	E	I	D	K	V	I	V	V	S	P	S	S	L	V	R	N	W	Y	N	E	V	G	K	W	L	G	G	R	V	Q	P	V	A	I	D	G	G	S	K	D	E	I	D	S	K	L	V	N	F	I	S	Q	Q	G	M	R	I	P	T	P	I	L	I	I	S	Y	E	T	F	R	L	H	.	.	.	A	E	V
Template Known Secondary structure		S		S		S																							G	G	G								S	S																	S	S			S															.	.	.	T	T	T
Template Predicted Secondary structure																																																																												.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	E	A	E	W	D	L	L	V	V	D	E	A	H	H	L	V	W	S	E	D	A	P	S	R	E	Y	Q	A	I	E	Q	L	A	E	H	V	P	G	V	L	L	L	T	A	T	P	E	Q	L	G	M	E	S	H	F	A	R	L	R	L	L	D	P	N	R	F	H	D	F	A	Q	F	V	E	E	Q	K	N
Query Conservation
Alig confidence																																			.	.	.	.	.
Template Conservation																																			.	.	.	.	.
Template Sequence		L	H	K	G	K	V	G	L	V	I	C	D	E	G	H	R	L	K	N	S	D	N	Q	T	Y	L	A	L	N	S	M	N	A	.	.	.	.	.	Q	R	R	V	L	I	S	G	T	P	I	Q	N	D	L	L	E	Y	F	S	L	V	H	F	V	N	S	G	I	L	G	T	A	Q	E	F	K	K	R	F	E	I
Template Known Secondary structure		T	T	T	S								T	T	G	G	G			T	T														.	.	.	.	.	S							S	S		S	G	G	G	G	G	G																							T
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.						.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	P	V	A	D	A	V	A	M	L	L	A	G	N	K	L	S	N	D	E	L	N	M	L	G	E	M	I	G	E	Q	D	I	E	P	L	L	Q	A	A	N	S	D	S	E	D	A	Q	S	A	R	Q	E	L	V	S	M	L	M	D	R	H	G	T	S	R	V	L	F	R	N	T	R	N	G	V	K	G	F
Query Conservation
Alig confidence																															.	.	.	.																							.																						.	.	.
Template Conservation																															.	.	.	.																							.																						.	.	.
Template Sequence		P	I	L	K	G	R	D	A	D	A	S	D	K	D	R	A	A	G	E	Q	K	L	Q	E	L	I	S	I	V	.	.	.	.	N	R	C	L	I	R	R	T	S	D	I	L	S	K	Y	L	P	V	K	I	E	Q	.	V	V	C	C	N	L	T	P	L	Q	K	E	L	Y	K	L	F	L	K	Q	A	.	.	.
Template Known Secondary structure								S	T	T			S																		.	.	.	.									G	G	G	G	G	G	T	S							.																						.	.	.
Template Predicted Secondary structure																															.	.	.	.																							.																						.	.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.					.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.																		.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	K	R	E	L	H	T	I	K	L	P	L	P	T	Q	Y	Q	T	A	I	K	V	S	G	I	M	G	A	R	K	S	A	E	D	R	A	R	D	M	L	Y	P	E	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Q	E	F	E	G	D	N	A	T	W	W	N	F	D	P	R	V
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	V	E	S	L	Q	T	G	K	I	S	V	S	S	L	S	S	I	T	S	L	K	K	L	C	N	H	P	A	L	I	Y	E	K	C	L	T	G	E	E	G	F	D	G	A	L	D	L	F	P	Q	N	Y	S	T	K	A	V	E	P	Q	L	S	G	K	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	S	S		T	T																				T										T		T	T		T	T	G	G	G	T	S		S	S			S	S	S			G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
		492	.	.	.	.	.	.	.	500	.				.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.		.	.	.	560	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.																																																								.
Query SS confidence												.	.	.																																																								.
Query Sequence		E	W	L	M	G	Y	L	T	S	H	.	.	.	R	S	Q	K	V	L	V	I	C	A	K	A	A	T	A	L	Q	L	E	Q	V	L	R	E	R	E	G	I	R	A	A	V	F	H	E	G	M	S	I	I	E	R	D	R	A	A	A	W	F	A	E	E	D	T	G	.	A	Q	V	L	L	C	S	E	I	G	S
Query Conservation												.	.	.																																																								.
Alig confidence												.	.	.																										.																														.
Template Conservation																																								.
Template Sequence		L	V	L	D	Y	I	L	A	M	T	R	T	T	T	S	D	K	V	V	L	V	S	N	Y	T	Q	T	L	D	L	F	E	K	L	C	R	N	R	.	R	Y	L	Y	V	R	L	D	G	T	M	S	I	K	K	R	A	K	I	V	E	R	F	N	N	P	S	S	P	E	F	I	F	M	L	S	S	K	A	G	G
Template Known Secondary structure																								S																.	T								S	S															S	T	T										G	G	G	S
Template Predicted Secondary structure																																								.
Template SS confidence
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530		.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	R	N	F	Q	F	A	S	H	M	V	M	F	D	L	P	F	N	P	D	L	L	E	Q	R	I	G	R	L	D	R	I	G	Q	A	H	D	I	Q	I	H	V	P	Y	L	E	K	T	A	Q	S	V	L	V	R	W	Y	H	E	G	L	D	A	F	E	H	T	C	P	T	G	R	T	I	Y	D	S	V	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	G	L	N	L	I	G	A	N	R	L	V	M	F	D	P	D	W	N	P	A	N	D	E	Q	A	M	A	R	V	W	R	D	G	Q	K	K	T	C	Y	I	Y	R	L	L	S	T	G	T	I	E	E	K	I	L	Q	R	Q	A	H	K	K	A	L	S	S	C	V	V	D	E	E	Q	D	V	E	R	H	F	S
Template Known Secondary structure		T	T				T	T								S			S	S									T	T	S	S	S	T	T			S										T	T	S															T	S					S		S	S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
		648	.	650	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	L	I	N	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	E	L	R	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		652	.	.	.	.	.	.