Job Description P60240 Confidence 55.67% Date Thu Jan 5 12:06:41 GMT 2012 Rank 233 Aligned Residues 139 % Identity 16% Template c1jr3E_ PDB info PDB header:transferase Chain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii Resolution 2.70 Å

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		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.																													.
Query SS confidence																					.	.	.	.	.																													.
Query Sequence		L	I	P	H	Q	L	N	I	A	H	D	V	G	R	R	H	A	P	R	.	.	.	.	.	V	L	L	A	D	E	V	G	L	G	K	T	I	E	A	G	M	I	L	H	Q	Q	L	L	S	G	A	A	.	E	R	V	L	I	I	V	P	E	T	L	Q	H	Q	W	L	V	E	M	L	R	R	F	N	L	R	F
Query Conservation																					.	.	.	.	.																													.
Alig confidence																					.	.	.	.	.																													.												.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.
Template Sequence		W	Y	P	W	L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	.	.	.	.	.	.	L	M	Q	A	G	T	H	P	D	Y
Template Known Secondary structure				T	T										T	T	T	T	T	S				S								T	T	S	S													T		S	S			S	S	S			S		S					.	.	.	.	.	.				T	S			S	S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.							.	.	.	70	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		A	L	F	D	D	E	R	Y	A	E	A	Q	H	D	A	Y	N	P	F	D	T	E	Q	L	V	I	C	S	L	D	F	A	R	R	S	K	Q	R	L	E	H	L	.	C	E	A	E	W	D	L	L	V	V	D	E	A	H	H	L	V	W	S	E	D	A	P	S	R	E	Y	Q	A	I	E	Q	L	A	E	H	V
Query Conservation																																												.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template Sequence		Y	T	L	A	P	E	K	G	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	.	.	.	T	D	A	A	A	N	A	L	L	K	T	L	E	E	P	P	A	E
Template Known Secondary structure								T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B													S	S			T	T	S	S							S		G	G	G	B	.	.	.														S			T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.																.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	V	L	L	L	T	A	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	W	F	F	L	A	T	R	E	P
Template Known Secondary structure									S		S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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