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Job DescriptionP60240
Confidence99.75%DateThu Jan 5 12:06:41 GMT 2012
Rank83Aligned Residues269
% Identity15%Templatec1a1vA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   173......180.........190.........200........ .210.........220.........230.........240.........250.
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Query Sequence  VLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP. ETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQL
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Template Sequence  AHLHAPTGSGKSTKVPAAYAA. . . . . QGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTI. . . . . . . . . TTGSPI
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   200.........210.........220 .........230.........240.........250......... 260.....
 
   252.......260.........270.........280.........290.........300.........310.........320.........330.
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Query Sequence  VICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLL
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Template Sequence  TYSTYGKFLAD. . . . . GGSGGAYDIIICDECHST. DATSILGIGTVLDQAETAGARLVVLATATPPGSVTVPH. . . . . . .
Template Known Secondary structure  T.....T





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   266...270...... ...280.........290.... .....300.........310.........320.........330..
 
   332.......340.........350.........360.........370.........380.........390.........400.........410.
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Query Sequence  DPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRH
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   412.......420.........430.........440.........450.........460.........470.........480.........490.
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Query Sequence  GTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PNIEEVALSTTGEIPF
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   334.....340.........
 
   492.......500.........510.........520.........530.........540.........550 .........560......
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Query Sequence  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF. . . . . AEEDTGAQVLLCSEIG
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Template Sequence  YGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVAL. GINAVAYYRGLDVSVIPTSGDVVVVATDALFTGDFDSVIDCNTV
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   350.........360.........370.........380.... .....390.........400.........410.........420........
 
   567..570 .........580.........590.........600.........610......
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Query Sequence  SEGR. . NFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT
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Template Sequence  TQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR. . . GKPGIYRFVAPGER
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BTTB
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   433......440.........450.........460....... ..470.........480.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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