Job Description P03024 Confidence 99.97% Date Thu Jan 5 10:57:56 GMT 2012 Rank 40 Aligned Residues 301 % Identity 11% Template d1jx6a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.50

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																															.	.												.
Query SS confidence																																															.	.												.
Query Sequence		T	V	S	R	V	I	N	N	S	P	K	A	S	E	A	S	R	L	A	V	H	S	A	M	E	S	L	S	Y	H	P	N	A	N	A	R	A	L	A	Q	Q	T	T	E	T	.	.	V	G	L	V	V	G	D	V	S	D	P	.	F	F	G	A	M	V	K	A	V	E	Q	V	A	Y	H	T	G	N	F	L	L
Query Conservation																																															.	.												.
Alig confidence												.	.	.	.	.	.						.	.																							.	.												.
Template Conservation												.	.	.	.	.	.						.	.
Template Sequence		G	Y	Q	E	F	L	D	E	F	P	.	.	.	.	.	.	E	Q	R	N	L	.	.	T	N	A	L	S	E	A	V	R	A	Q	P	V	P	L	S	K	P	T	Q	R	P	I	K	I	S	V	V	Y	P	G	Q	Q	V	S	D	Y	W	V	R	N	I	A	S	F	E	K	R	L	Y	K	L	N	I	N	Y	Q
Template Known Secondary structure												.	.	.	.	.	.						.	.										S						S	S			S	S												S	S																		T	T
Template Predicted Secondary structure												.	.	.	.	.	.						.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.							40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		94	.	.					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure					.	.	.	.																											.																										.	.	.	.	.	.	.
Query SS confidence					.	.	.	.																											.																										.	.	.	.	.	.	.
Query Sequence		I	G	N	.	.	.	.	G	Y	H	N	E	Q	K	E	R	Q	A	I	E	Q	L	I	R	H	R	C	A	A	L	V	V	H	.	A	K	M	I	P	D	A	D	L	A	S	L	M	K	Q	M	P	G	M	V	L	I	N	R	I	.	.	.	.	.	.	.	L	P	G	F	E	N	R	C	I	A	L	D	D	R
Query Conservation					.	.	.	.																											.																										.	.	.	.	.	.	.
Alig confidence					.	.	.	.																											.																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	N	Q	V	F	T	R	P	N	A	D	I	K	Q	Q	S	L	S	L	M	E	A	L	K	S	K	S	D	Y	L	I	F	T	L	D	T	T	R	H	R	K	F	V	E	H	V	L	D	S	T	N	T	K	L	I	L	Q	N	I	T	T	P	V	R	E	W	D	K	H	Q	P	F	L	Y	V	G	F	D	H	A
Template Known Secondary structure									T	T																T	T		S							S	S	S	T	T												S							T			S		B	G	G	G	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	A	W	L	A	T	R	H	L	I	Q	Q	G	H	T	R	I	G	Y	L	C	S	N	H	S	I	S	D	A	E	D	R	L	Q	G	Y	Y	D	A	L	A	E	S	G	I	A	A	N	D	R	L	V	T	F	G	E	P	D	E	S	G	G	E	Q	A	M	T	E	L	L	G	R	G	R	N	F	T	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	S	R	E	L	A	T	E	F	G	K	F	F	P	K	H	T	Y	Y	S	V	L	Y	F	S	E	G	Y	I	S	D	V	R	G	D	T	F	I	H	Q	V	N	R	D	N	N	F	E	L	Q	S	A	Y	Y	T	K	A	T	K	Q	S	G	Y	D	A	A	K	A	S	L	A	K	H	P	D	V	D	F	I
Template Known Secondary structure															S		T	T									S	T	T																														S	S																			S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.									.
Query SS confidence																																							.	.									.
Query Sequence		A	C	Y	N	D	S	M	A	A	G	A	M	G	V	L	N	D	N	G	I	D	V	P	G	E	I	S	L	I	G	F	D	D	V	L	V	S	.	.	R	Y	V	R	P	R	L	T	.	T	V	R	Y	P	I	V	T	M	A	T	Q	A	A	E	L	A	L	A	L	A	D	N	R	P	L	P	E	I	T	N	V
Query Conservation																																							.	.									.
Alig confidence																						.	.	.															.	.									.																												.
Template Conservation																						.	.	.																																																					.
Template Sequence		Y	A	C	S	T	D	V	A	L	G	A	V	D	A	L	A	E	L	G	R	.	.	.	E	D	I	M	I	N	G	W	G	G	G	S	A	E	L	D	A	I	Q	K	G	D	L	D	I	T	V	M	R	M	N	D	D	T	G	I	A	M	A	E	A	I	K	W	D	L	E	D	K	P	V	P	.	T	V	Y	S
Template Known Secondary structure				S	S															T		.	.	.	T	T	S			B		S	B												T	S	S								T																T	T					.	S
Template Predicted Secondary structure																						.	.	.																																																					.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	P	T	L	V	R	R	H	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	F	E	I	V	T	K	A	D	S
Template Known Secondary structure									T	T	S
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions