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Job DescriptionP03024
Confidence100.00%DateThu Jan 5 10:57:56 GMT 2012
Rank11Aligned Residues272
% Identity23%Templatec2o20H_
PDB info PDB header:transcriptionChain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   57..60.........70.........80.........90.........100.........110.........120.........130......
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Query Sequence  QTTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQKERQAIEQLIRHRCAALVVHAKMIPDADLASLMK
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Template Sequence  KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKN
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   61........70.........80.........90.........100.........110.........120.........130.........140
 
   137..140.........150.........160.........170.........180.........190.........200.........210......
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Query Sequence  QMPGMVLINRILPGFENRCIALDDRYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYDALAESGIAANDRLVTF
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Template Sequence  SRTPVVLVGTIDGDKEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFE
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   141........150.........160.........170.........180.........190.........200.........210.........220
 
   217..220.........230.........240.........250.........260.........270.........280.........290......
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Query Sequence  GEPDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVLVSRYVRPRLTTVRYPIVTMA
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Template Sequence  GNYSYEQGKALAERLLE. . RGATSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLG
Template Known Secondary structure  S

STT..TT
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   221........230....... ..240.........250.........260.........270.........280.........290........
 
   297..300.........310.........320.........330
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Query Sequence  TQAAELALALADNRPLPEITNVFSPTLVRRHSVS
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Template Sequence  AVAMRLLTKLMLKEDVEQNQLVLDHEIFSRRSTK
Template Known Secondary structure  TT


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   299300.........310.........320.........330..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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