Job Description P03024 Confidence 99.55% Date Thu Jan 5 10:57:56 GMT 2012 Rank 79 Aligned Residues 241 % Identity 10% Template c2fqxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine Resolution 1.70 Å

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		61	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure												.	.	.																																																																			.
Query SS confidence												.	.	.																																																																			.
Query Sequence		T	V	G	L	V	V	G	D	V	S	.	.	.	D	P	F	F	G	A	M	V	K	A	V	E	Q	V	A	Y	H	T	G	N	F	L	L	I	G	N	G	Y	H	N	E	Q	K	E	R	Q	A	I	E	Q	L	I	R	H	R	C	A	A	L	V	V	H	A	K	M	I	P	D	A	D	L	A	S	L	M	K	.
Query Conservation												.	.	.																																																																			.
Alig confidence												.	.	.																															.																																				.
Template Conservation																																													.
Template Sequence		V	V	G	M	V	T	D	S	G	D	I	D	D	K	S	F	N	Q	Q	V	W	E	G	I	S	R	F	A	Q	E	N	N	A	K	C	K	Y	V	T	A	S	T	D	.	A	E	Y	V	P	S	L	S	A	F	A	D	E	N	M	G	L	V	V	A	C	G	S	F	L	V	E	A	V	I	E	T	S	A	R	F
Template Known Secondary structure								S	S	S		T	T	S	S	S																T	T										S	G	.	G	G											T	T		S						S	T	T	T
Template Predicted Secondary structure																																													.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
			137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure		.																															.	.	.
Query SS confidence		.																															.	.	.
Query Sequence		.	Q	M	P	G	M	V	L	I	N	R	I	L	P	G	F	E	N	R	C	I	A	L	D	D	R	Y	G	A	W	L	.	.	.	A	T	R	H	L	I	Q	Q	G	H	T	R	I	G	Y	L	C	S	N	H	S	I	S	D	A	E	D	R	L	Q	G	Y	Y	D	A	L	A	E	S	G	I	A	A	N	D	R
Query Conservation		.																															.	.	.
Alig confidence		.																															.	.	.
Template Conservation
Template Sequence		P	K	Q	K	F	L	V	I	D	A	V	V	Q	D	R	D	N	V	V	S	A	V	F	G	Q	N	E	G	S	F	L	V	G	V	A	A	A	L	K	A	K	E	A	G	K	S	A	V	G	F	I	V	G	M	E	L	G	M	M	P	L	F	E	A	G	F	E	A	G	V	K	A	V	D	P	D	I	Q	V	V
Template Known Secondary structure		T	T	S						S	S				S		T	T																										T	T									S			S	T	T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		213	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.						.	.
Predicted Secondary structure									.																																																																		.	.	.	.	.
Query SS confidence									.																																																																		.	.	.	.	.
Query Sequence		L	V	T	F	G	E	P	.	D	E	S	G	G	E	Q	A	M	T	E	L	L	G	R	G	R	N	F	T	A	V	A	C	Y	N	D	S	M	A	A	G	A	M	G	V	L	N	D	N	G	I	D	V	P	G	E	I	S	L	I	G	F	D	D	V	L	V	S	R	Y	V	R	P	R	.	.	.	.	.	L	T
Query Conservation									.																																																																		.	.	.	.	.
Alig confidence									.																.	.																											.																						.	.	.	.	.
Template Conservation																									.	.																											.
Template Sequence		V	E	V	A	N	T	F	S	D	P	Q	K	G	Q	A	L	A	A	K	L	Y	D	S	.	.	G	V	N	V	I	F	Q	V	A	G	G	T	G	N	G	V	I	K	E	A	R	D	R	R	L	N	.	G	Q	D	V	W	V	I	G	V	D	R	D	Q	Y	M	D	G	V	Y	D	G	S	K	S	V	V	L	T
Template Known Secondary structure						S		S	S															T	.	.	T									G	G	G														T	.	T										S			G	G	G	G	B		S	S	S		B	S
Template Predicted Secondary structure																									.	.																											.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	R	Y	P	I	V	T	M	A	T	Q	A	A	E	L	A	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	M	V	K	R	A	D	V	A	A	E	R	I	S	K	M	A	Y	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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