Job Description P77218 Confidence 99.79% Date Thu Jan 5 12:26:31 GMT 2012 Rank 12 Aligned Residues 279 % Identity 16% Template d1r8ka_ SCOP info Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like PdxA-like Resolution 2.10

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		13	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.												.	.
Predicted Secondary structure														.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	P	A	R	V	V	F	P	D	A	L	D	.	.	.	.	Q	R	V	L	K	A	A	Q	Y	L	H	Q	Q	G	L	A	T	P	I	L	V	A	N	P	F	E	L	R	Q	F	A	L	S	H	G	V	A	M	D	G	L	Q	V	I	D	P	H	G	N	L	A	.	.	.	.	.	.	.	.	.	.	.	M	R
Query Conservation														.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.					.	.																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.
Template Sequence		S	A	Q	R	V	V	I	T	P	G	E	P	A	G	S	G	P	D	L	V	.	.	V	Q	L	A	Q	R	A	W	P	I	E	L	V	V	C	A	D	G	A	L	L	T	E	R	A	A	X	L	G	L	P	L	S	L	L	P	Y	S	P	D	V	P	A	A	P	Q	P	A	G	T	L	T	L	L	P	V	S	L
Template Known Secondary structure													T	T	S	S						.	.				T	T	S			S	S																		T	T										T	T	S							T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.								.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																													.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.
Query Sequence		E	E	F	A	H	R	W	L	A	R	A	G	E	K	T	P	P	D	A	L	E	K	L	T	D	P	L	M	F	A	A	A	M	V	S	A	G	K	A	D	V	C	I	A	G	N	L	S	S	T	A	N	V	L	R	A	G	L	R	.	.	.	.	.	.	.	I	I	G	L	Q	P	G	C	K	T	L	S	S	I
Query Conservation																																																													.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.																																	.	.														.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.																																	.	.
Template Sequence		R	A	P	A	I	S	.	.	.	.	.	.	G	Q	L	T	V	E	N	G	P	Y	V	V	E	T	L	A	R	A	C	D	G	C	L	N	G	E	F	A	A	L	I	T	.	.	G	P	V	H	K	G	V	I	N	D	A	G	I	S	F	T	G	H	T	E	F	F	E	E	R	S	Q	A	K	K	V	V	X	X
Template Known Secondary structure		S	S			B	T	.	.	.	.	.	.	T	B			G	G	G																	T	T	S		S					.	.										T	T	T				S										T	T		S
Template Predicted Secondary structure								.	.	.	.	.	.																																	.	.
Template SS confidence
		81	.	.	.	.	.							.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.						.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure															.	.	.	.	.																													.														.	.	.	.
Query SS confidence															.	.	.	.	.																													.														.	.	.	.
Query Sequence		F	L	M	L	P	Q	Y	S	G	P	A	L	G	.	.	.	.	.	F	A	D	C	S	V	V	P	Q	P	T	A	A	Q	L	A	D	I	A	L	A	S	A	E	T	W	R	A	.	I	T	G	E	E	P	R	V	A	M	L	S	F	.	.	.	.	S	S	N	G	S	A	R	H	P	C	V	A	N	V	Q	Q
Query Conservation															.	.	.	.	.																													.														.	.	.	.
Alig confidence					.	.									.	.	.	.	.									.	.																			.														.	.	.	.
Template Conservation					.	.																						.	.
Template Sequence		L	A	T	.	.	E	E	L	R	V	A	L	A	T	T	H	L	P	L	R	A	I	A	D	A	I	.	.	T	P	A	L	L	H	E	V	I	A	I	L	H	H	D	L	R	T	K	F	G	I	A	E	P	R	I	L	V	C	G	L	N	P	H	A	G	E	G	G	H	X	G	T	E	E	I	D	T	I	I	P
Template Known Secondary structure					.	.	S	S						S	S		S											.	.																			T	S			S	S								S	S	G	G	G	G	G	G	G	T	T		S					T
Template Predicted Secondary structure					.	.																						.	.
Template SS confidence
		153	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	E	I	V	R	E	R	A	P	K	L	V	V	D	G	E	L	Q	F	D	A	A	F	V	P	E	V	A	A	Q	K	A	P	A	S	P	L	Q	G	K	A	N	V	M	V	F	P	S	L	E	A	G	N	I	G	Y	K	I	A	Q	R	L	G	G	Y	R	A	V	G	P	L	I	Q	G	L	A	A	P	M
Query Conservation
Alig confidence										.	.																			.	.	.	.	.	.	.	.	.	.																														.	.	.	.						.	.
Template Conservation										.	.																			.	.	.	.	.	.	.	.	.	.																														.	.	.	.						.	.
Template Sequence		V	L	D	E	L	R	A	Q	.	.	G	X	K	L	N	G	P	L	P	A	D	T	L	F	Q	P	K	Y	.	.	.	.	.	.	.	.	.	.	L	D	N	A	D	A	V	L	A	X	Y	H	D	Q	G	L	P	V	L	K	Y	Q	G	F	G	R	G	V	N	.	.	.	.	I	T	L	G	L	.	.	P	F
Template Known Secondary structure								T	T	.	.	T													S	S				.	.	.	.	.	.	.	.	.	.		T	T		S					S	S													T	T					.	.	.	.				S	S	.	.	S	S
Template Predicted Secondary structure										.	.																			.	.	.	.	.	.	.	.	.	.																														.	.	.	.						.	.
Template SS confidence
		229	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.											.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.					.	.	.	.	.			.	290
		301	.	.	.	.													.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	D	L	S	R	.	.	.	.	.	.	.	.	.	.	.	.	G	C	S	V	Q	E	I	I	E	L	A	L	V	A	A	V	P	R
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	R	T	S	V	D	H	G	T	A	L	E	L	A	G	R	G	K	A	D	V	G	S	F	I	T	A	L	N	L	A	I	K	X	I
Template Known Secondary structure							S	S				T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions