Job Description P77218 Confidence 99.92% Date Thu Jan 5 12:26:31 GMT 2012 Rank 11 Aligned Residues 276 % Identity 14% Template c1yxoB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxythreonine-4-phosphate dehydrogenase 1; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic protein pdxa2 pa0593 Resolution 2.01 Å

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		15	.	.	.	.	20	.	.	.	.						.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	V	V	F	P	D	A	L	D	.	.	.	.	.	Q	R	V	L	K	A	A	Q	Y	L	H	Q	Q	G	L	A	T	P	I	L	V	A	N	P	F	E	L	R	Q	F	A	L	S	H	G	V	A	M	D	G	L	Q	V	I	D	P	H	G	N	L	A	M	R	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.			.	.	.	.	.					.	.																																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.												.	.
Template Sequence		L	R	F	A	L	T	P	.	G	E	P	A	G	I	G	P	D	L	C	.	.	L	L	L	A	R	S	A	Q	P	H	P	L	I	A	I	A	S	R	T	L	L	Q	E	R	A	G	Q	L	G	L	A	I	D	L	K	D	V	S	P	A	A	W	P	E	R	P	A	K	A	G	Q	L	Y	V	W	D	T	P	L
Template Known Secondary structure									.		S	T	T	S	S						.	.			G	G	G	S			S	S																			T									B	T	T	B				S				T	T
Template Predicted Secondary structure									.												.	.
Template SS confidence
		1003	.	.	.	.	.	.		1010	.	.	.	.	.	.	.	.	.	1020			.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.
									79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.								.	.	.	140	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	E	F	A	H	R	W	L	A	R	A	G	E	K	T	P	P	D	A	L	E	K	L	T	D	P	L	M	F	A	A	A	M	V	S	A	G	K	A	D	V	C	I	A	G	N	L	S	S	T	A	N	V	L	R	A	G	L	R	.	.	.	.	.	.	.	I	I	G	L	Q	P	G	C
Query Conservation		.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.																						.	.														.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		A	A	P	V	R	P	G	Q	L	D	R	A	N	A	A	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	L	E	T	L	T	R	A	G	Q	G	C	L	D	G	H	F	A	G	X	I	T	.	.	A	P	V	H	K	G	V	I	N	E	A	G	I	P	F	S	G	H	T	E	F	L	A	D	L	T	H	T
Template Known Secondary structure		S	S			B	T	T	B			G	G	G					.	.	.	.	.	.	.	.	.	.	.	.														T	S		S					.	.											T	T				S										T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.													.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.			.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																													.														.	.	.	.
Query SS confidence																					.	.	.																													.														.	.	.	.
Query Sequence		K	T	L	S	S	I	F	L	M	L	P	Q	Y	S	G	P	A	L	G	.	.	.	F	A	D	C	S	V	V	P	Q	P	T	A	A	Q	L	A	D	I	A	L	A	S	A	E	T	W	R	A	.	I	T	G	E	E	P	R	V	A	M	L	S	F	.	.	.	.	S	S	N	G	S	A	R	H	P	C	V	A
Query Conservation																					.	.	.																													.														.	.	.	.
Alig confidence											.	.									.	.	.																													.														.	.	.	.
Template Conservation											.	.
Template Sequence		A	Q	V	V	X	X	L	A	T	.	.	R	G	L	R	V	A	L	A	T	T	H	L	P	L	R	E	V	A	D	A	I	S	D	E	R	L	T	R	V	A	R	I	L	H	A	D	L	R	D	K	F	G	I	A	H	P	R	I	L	V	C	G	L	N	P	H	A	G	E	G	G	H	L	G	R	E	E	I	E
Template Known Secondary structure		S									.	.	T	T						S	S		S	S																												T	S			S	S								S	S	G	G	G	G	G	G	G	T	S		S
Template Predicted Secondary structure											.	.
Template SS confidence
		1146	.	.	.	1150	.	.	.	.			.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	Q	Q	A	T	E	I	V	R	E	R	A	P	K	L	V	V	D	G	E	L	Q	F	D	A	A	F	V	P	E	V	A	A	Q	K	A	P	A	S	P	L	Q	G	K	A	N	V	M	V	F	P	S	L	E	A	G	N	I	G	Y	K	I	A	Q	R	L	G	G	Y	R	A	V	G	P	L	I	Q	G	L
Query Conservation
Alig confidence														.	.																			.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation														.	.																			.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Sequence		V	I	E	P	C	L	E	R	L	R	G	E	.	.	G	L	D	L	I	G	P	L	P	A	D	T	L	F	T	P	K	H	.	.	.	.	.	.	.	.	.	.	L	E	H	C	D	A	V	L	A	X	Y	H	D	Q	G	L	P	V	L	K	Y	K	G	F	G	A	A	V	N	.	.	.	.	V	T	L	G	L
Template Known Secondary structure		T											T	.	.	T													S	S				.	.	.	.	.	.	.	.	.	.		T	T		S					S	S												T	T	T					.	.	.	.				T	S
Template Predicted Secondary structure														.	.																			.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template SS confidence
		1224	.	.	.	.	.	1230	.	.	.	.	.			.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.											.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.					.	.	.	.	.
		297	.	.	300	.											.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	P	M	H	.	.	.	.	.	.	.	.	.	.	D	L	S	R	G	C	S	V	Q	E	I	I	E	L	A	L	V	A	A	V	P	R	Q	T
Query Conservation							.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	I	I	R	T	S	V	D	H	G	T	A	L	D	L	A	G	S	G	R	I	D	S	G	S	L	Q	V	A	L	E	T	A	Y	Q	X	A	A	S
Template Known Secondary structure		S	S						S	S				G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		1288	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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