Job Description P0AEN4 Confidence 3.57% Date Thu Jan 5 11:23:47 GMT 2012 Rank 44 Aligned Residues 37 % Identity 16% Template c3qqcA_ PDB info PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain Resolution 3.30 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.							.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																								.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.
Query Sequence		T	T	A	H	H	T	R	L	L	T	A	Q	R	E	Q	L	V	L	E	R	D	A	.	.	.	.	.	.	L	D	I	E	W	R	N	L	I	L	E	E	N	A	L
Query Conservation																								.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	T	H	K	L	V	D	I	I	R	I	N	N	R	L	K	Q	N	I	E	A	G	A	P	Q	L	I	I	E	D	L	W	D	L	L	Q	Y	H	V	T	T	Y
Template Known Secondary structure																							S				S
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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